RNA id: AMCG00019811


Basic Information

Item Value
RNA id AMCG00019811
length 1282
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00019811
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 46823246 ~ 46836213 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGCCGCGCCTCCCGCGGGACGGCAGTGGCGGCCGAGCTGTGCTGCGCGGAATGCGGTGTGACTGAGTTATTTATAGACAGCAGCCAGCGCGCCCAGAGCCGCACTGAGGATAAACAAGGGCACTTGTTGTAGGCTCATTGTACAACCCCACATCTATAAGAAGAAAACTCACGTTTAACCTCGGACAACGTTTTAAAGGTGATTGTATTGGGCGAGCTTTGACCCAGAGCCACCTGACATGGAAAATGAAGACAGGGGATCGGGCATGAGctgGGAAGTCATCGACTCCAAGCAGGAGATTAGGCCGGAGACCAGCTCGTGTGCCACCGAGCCCTGGATGAGTGGTAGCCTGTTCCTACAAGAAATGTCCTCCTTTAAACAGCAGAACCCGGGCAAGTTCTGCCTTCTAGTGTGCAGCCTGTGCACTTTCCTGGCTGTGCTTGGGCTGCTGAGTTTCTTTCTGTGGCCCCTGCTGTCCTCCCAGGAGTTTAGCATATGGCTTGAACCAGTCCTACAGAAGCTGGATTTTGGCATTGGAGATTTCCtgcagaaaattaaaatgaaacttaaGGAGAGTCACGAAAAAAGGAACATCAAGAGTAAGGAGGAGAACAGTGAAGCAGACTTATCTGCCCTTTTCCcaaagaTGGACGCCTCAGCTATCTGCAAGGAGCTGTCCATATCTGACACGGAGGCCTCTGAGGTGTCCTGGACAGAAAACGGGACCTTCAACCTCTCAGAGGGACACACTCCGCAGACCGAAAACTCTGATGACTTGGACCGGCCCAGCGATCAAGAGGAGGCGTTCTCAGGTGGGCTCCCTGAGTTCCCGTCTCTGGACACCAATGGCACGGGCACCAATGGCGACGACGAGGACCTAAGCATCGGCCTGCCTGCCCCACATTCCGCAGGCCTGGGTGTGGGGGACGGCGGGGTGTTGGCAGGGGAGCGGGCGCTGGAGCTGGTGAACAAGATGGCGGGGGACGTCATCGCTGCGGCAGTCTGTGCGGCCATTCATGAGCAGCTGGACGCCGCCTTGCCATGGGCTGCCTCTTCTcctactcctcttcctcctgctgccACTGCTGCTCCTGCCCTGGACTTCAACACGGACAGCGAGGAAGGAGAGGACTTCGAGCTCCTGGACCAGTCAGAACTGGAGCAGCTGGAGAGCGAGCTGGGCCTCATTACCCCCCAGGAGACAGAGCAGCACAGCCCTGCCGACGCACCCAAACCCAAACCCTCCGGATTCCTCTCTAGCCTGCTGGGGCGGCATTAA

Function

GO: NA

KEGG:

id description
K23880 RETREG; reticulophagy regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46910 lncRNA upstream 22832 46800116 ~ 46800414 (+) True G37567
TU46866 lncRNA upstream 250448 46572301 ~ 46572798 (+) True G37524
TU46862 lncRNA upstream 258148 46555190 ~ 46565098 (+) False G37521
TU46863 lncRNA upstream 258148 46559162 ~ 46565098 (+) True G37521
TU46856 lncRNA upstream 272691 46548815 ~ 46550555 (+) True G37516
TU46980 lncRNA downstream 328781 47164994 ~ 47165220 (+) True G37630
TU47006 lncRNA downstream 563513 47399726 ~ 47467840 (+) True G37655
TU47016 lncRNA downstream 813448 47649661 ~ 47657993 (+) False AMCG00019820
TU47036 lncRNA downstream 850157 47686370 ~ 47686811 (+) True G37678
TU47037 lncRNA downstream 850677 47686890 ~ 47690253 (+) True G37679
AMCG00019812 mRNA upstream 51677 46664207 ~ 46771569 (+) True AMCG00019812
AMCG00019804 mRNA upstream 1564287 45257308 ~ 45258959 (+) True AMCG00019804
AMCG00019803 mRNA upstream 1585845 45206216 ~ 45237401 (+) True AMCG00019803
AMCG00019796 mRNA upstream 1649328 45158209 ~ 45173918 (+) True AMCG00019796
AMCG00019798 mRNA upstream 1757958 45064638 ~ 45065288 (+) True AMCG00019798
AMCG00019814 mRNA downstream 5235 46841448 ~ 46844186 (+) True AMCG00019814
AMCG00019810 mRNA downstream 13706 46849919 ~ 46861698 (+) True AMCG00019810
AMCG00019817 mRNA downstream 232783 47068996 ~ 47069748 (+) True AMCG00019817
AMCG00019821 mRNA downstream 744079 47580292 ~ 47593154 (+) True AMCG00019821
AMCG00019820 mRNA downstream 786555 47622768 ~ 47658001 (+) True AMCG00019820
TU46904 other upstream 31761 46791027 ~ 46791485 (+) True G37561
TU46693 other upstream 1483627 45279455 ~ 45339619 (+) False G37372
TU46357 other upstream 2766643 44053074 ~ 44056603 (+) True G37105
TU46181 other upstream 3489933 43330292 ~ 43333313 (+) True G36954
TU46165 other upstream 3552361 43261894 ~ 43270885 (+) False AMCG00019758
TU47161 other downstream 1614415 48450628 ~ 48451167 (+) True G37779
TU47362 other downstream 2722269 49558482 ~ 49561383 (+) True G37962
TU47365 other downstream 2726681 49562894 ~ 49563214 (+) True G37964
TU47369 other downstream 2734974 49571187 ~ 49571486 (+) True G37968
TU47520 other downstream 4007542 50843755 ~ 50845879 (+) True G38084

Expression Profile