RNA id: TU542156


Basic Information

Item Value
RNA id TU542156
length 200
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G472457
representative True

Chromosome Information

Item Value
chromosome id CI01000327
NCBI id null
chromosome length 4453825
location 4361090 ~ 4361289 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAGGGGTGCTTTTGCTGTACGTTTCTGAGTGGATGACCTCTCAGGGTGAGTTTTTGTGGTAAAACCTTACTGAGGTTTGGTTTTAACTACATTTGCCTCCTTGAGTCTGGGTAACTCTAGTTGAGCTAAATAGCTACCTAGTATTTAGGTTGGTTCTATTTTTTGCTCCTAGAACCCTAATGGCCACCAGACTAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU542154 lncRNA downstream 1092 4359625 ~ 4359998 (-) True G472455
TU541968 lncRNA downstream 174525 4186049 ~ 4186565 (-) True G472300
TU541966 lncRNA downstream 178067 4182670 ~ 4183023 (-) True G472298
TU541886 lncRNA downstream 209192 4146797 ~ 4151898 (-) True G472224
TU541947 lncRNA downstream 354427 4006390 ~ 4006663 (-) True G472284
TU542158 lncRNA upstream 12810 4374099 ~ 4374334 (-) True G472459
TU542160 lncRNA upstream 15947 4377236 ~ 4377632 (-) True G472461
TU542136 lncRNA upstream 60620 4421909 ~ 4426418 (-) True G472437
CI01000327_04315483_04319983.mRNA mRNA downstream 40363 4315369 ~ 4320727 (-) True CI01000327_04315483_04319983
CI01000327_04232877_04277027.mRNA mRNA downstream 84063 4232877 ~ 4277027 (-) True CI01000327_04232877_04277027
CI01000327_04196209_04202497.mRNA mRNA downstream 157620 4195990 ~ 4203470 (-) True CI01000327_04196209_04202497
CI01000327_04179387_04181415.mRNA mRNA downstream 179588 4177944 ~ 4181502 (-) True CI01000327_04179387_04181415
CI01000327_04140716_04142767.mRNA mRNA downstream 218255 4139514 ~ 4142835 (-) True CI01000327_04140716_04142767
CI01000327_04405469_04408613.mRNA mRNA upstream 43720 4405009 ~ 4408613 (-) True CI01000327_04405469_04408613
CI01000327_04429751_04432240.mRNA mRNA upstream 68401 4429690 ~ 4432240 (-) True CI01000327_04429751_04432240
TU541913 other downstream 578422 3781696 ~ 3782668 (-) True G472251
TU539806 other downstream 4086795 273732 ~ 274295 (-) True G470330
TU542169 other upstream 34801 4396090 ~ 4396430 (-) True G472470

Expression Profile