RNA id: TCONS_00022032


Basic Information

Item Value
RNA id TCONS_00022032
length 977
lncRNA type read_through
GC content 0.38
exon number 2
gene id XLOC_010240
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 46555394 ~ 46569152 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTTTTAATgcaagctttatttttttaaaagtgaaattgaTATCCAAGCGGTACAGGTATGTGGTCCACAGTGGGTTTACTCAACTTACAAGTTGTGCATTGTGCATGACGAGCtctctcatcatttaaagttttcACTATTTGAAAAGTTGACCAGAAGTTTGCCTGACTTTTTCAGTTTTAAGTTCGCCtttgccattttttttctttatgctaTCTATTGCACTTTGCTGGAAATCTCAAACTTGCCTCATTAAACTTTGTTTTGCAGTTTCTTCTAAAGCAGGCTCAGGCTCAAATGCAGGGCTCTAAGCTAAACACCCATTAAAATCTGTTAAAACCAATGATCACTTGAATCAAATCAAAGCCTGGAAAGTCCATTGCTATGACCCCAAAACAAAGctttatatacattttagaaGCGCCTTCAAGATTATTGTATAGCCAAGGGTTGATTTTTTTGGCCACTTTCTTTGGGGTTTTGTCTGGTCTAAATACAGGCCAGCCTGTGCCGCTTGAATAGTTTAGCACAACTTCATTCACTTTACAAGCTTCCAAAGCCTGATTCAGATGCTCAATAATTTTATCCTTCTTGTTTTCAACATTACCTACTTTATAGTCACCCTTTTTATCAGTTTCTAACATAGGGATTCCCAGTTTAAAGTTGTTTTTCTGAACAAAAACAATCTTTCCTCTTACTTCTCTAATTCGCGGTATTTTATTTCTAACCCAACATCCAGGATCATTTTTAAGCTGATTTGCAACATCGTCTGGAAATGGGCCCTTTGACTCGAGCTTGACTCTTAGCAACACTGTCTCTGATTTATGTTGAGACAAAAAACCCTTAACTATGTTGAGAACATTAGCGAACGTTGTATGTTGTGAAATCACACCATGCACAACTTTCAGGTTCCTCCCCTTCACTCTCAATTCCAGGTAGCGTATGCCGGCGTTCAGCTGATTCTCCAGTAACCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021750 lncRNA upstream 273238 46276944 ~ 46282156 (+) True XLOC_010233
TCONS_00022031 lncRNA upstream 284506 46269724 ~ 46270888 (+) True XLOC_010232
TCONS_00022030 lncRNA upstream 451384 46085390 ~ 46104010 (+) True XLOC_010229
TCONS_00022029 lncRNA upstream 564552 45988431 ~ 45990842 (+) True XLOC_010228
TCONS_00022027 lncRNA upstream 743070 45787042 ~ 45812324 (+) False XLOC_010225
TCONS_00022034 lncRNA downstream 221525 46790677 ~ 46794166 (+) False XLOC_010246
TCONS_00021751 lncRNA downstream 222069 46791221 ~ 46794172 (+) True XLOC_010246
TCONS_00022035 lncRNA downstream 227274 46796426 ~ 46797326 (+) True XLOC_010247
TCONS_00022036 lncRNA downstream 257436 46826588 ~ 46830237 (+) True XLOC_010249
TCONS_00021753 lncRNA downstream 814643 47383795 ~ 47389378 (+) False XLOC_010255
TCONS_00020255 mRNA upstream 51576 46497154 ~ 46503818 (+) True XLOC_010239
TCONS_00020254 mRNA upstream 52772 46497149 ~ 46502622 (+) False XLOC_010239
TCONS_00020252 mRNA upstream 59101 46492756 ~ 46496293 (+) False XLOC_010238
TCONS_00020253 mRNA upstream 60177 46492994 ~ 46495217 (+) True XLOC_010238
TCONS_00020251 mRNA upstream 90298 46459680 ~ 46465096 (+) True XLOC_010237
TCONS_00020256 mRNA downstream 96922 46666074 ~ 46681170 (+) False XLOC_010242
TCONS_00020257 mRNA downstream 97013 46666165 ~ 46680634 (+) True XLOC_010242
TCONS_00020258 mRNA downstream 115703 46684855 ~ 46691206 (+) True XLOC_010243
TCONS_00020259 mRNA downstream 126625 46695777 ~ 46714052 (+) True XLOC_010244
TCONS_00020260 mRNA downstream 155935 46725087 ~ 46741779 (+) True XLOC_010245
TCONS_00020229 other upstream 888542 45666735 ~ 45666852 (+) True XLOC_010222
TCONS_00020228 other upstream 967064 45588214 ~ 45588330 (+) True XLOC_010221
TCONS_00020217 other upstream 1850240 44704372 ~ 44705154 (+) True XLOC_010213
TCONS_00020216 other upstream 1867459 44683065 ~ 44687935 (+) True XLOC_010212
TCONS_00020214 other upstream 1949954 44605326 ~ 44605440 (+) True XLOC_010211
TCONS_00020265 other downstream 443189 47012341 ~ 47012457 (+) True XLOC_010251
TCONS_00020272 other downstream 1454141 48023293 ~ 48023408 (+) True XLOC_010259
TCONS_00020273 other downstream 1589157 48158309 ~ 48158423 (+) True XLOC_010260
TCONS_00020274 other downstream 1687861 48257013 ~ 48257130 (+) True XLOC_010261
TCONS_00020297 other downstream 2978619 49547771 ~ 49547886 (+) True XLOC_010272