RNA id: CI01000340_10557213_10612562.mRNA


Basic Information

Item Value
RNA id CI01000340_10557213_10612562.mRNA
length 717
RNA type mRNA
GC content 0.50
exon number 3
gene id CI01000340_10557213_10612562
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10557213 ~ 10612562 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGACTCAAGCAGATCAGTGTCGGTATGTAGTGGGCAGTATACTGTGTGAAAATGAAGAAAAACCTGATGAAGAGCTACAGCGTCTGTATGAGAAATTCGGCTACAAAGTCATCTCCTTCCCAGAAGTCACCTGTGCCGTAACTTCATCGTTTCCGAACAGATGCACACTGTCTCCCGTCTGCGGCGCTTATAGAGTCTACCCTGAACTACAACAGTATATAAAGGAAAGGAGTCTAAATGCGTGCCCATTCCTGGAGATATGCAAAGGAGATCTGATCCATTACATGTGTCCTCTAGAGAATCAGATGGACTTCTGCGTGCCTGAACTTTATGAGAAGAAAACATCTGATGACATGGAGGAAACAGTGGAGCATAAAGACGCTGATGTCACAGATTCAGGGGCAGGTGAGCTGGAGCAAAAGTCAAGCTCAGTGTTCCAGGAAGTGGTTGAAGAGAGCAGGGATGTGGTGGAGGCCTCTGCCCCATTGCTGGAGAGCTCTCAGCCTGGTCTGGGTGAGGAAGAGGGTCACAGCGAGGATGGGGACCAAGGGGGCAAGGGGTCCAGTGAGTCTGTAGGCAGTGGCTCTTCCTTTGAAGAGCTGGACATGGAAATGGAAGAGGAGAAAGAGGAGAAGAAAAACGAAGCAGAGGAGGAAGACCATAATGGACAGCAGAAGCCAGCGATGGTGGGAGAAACAATCGGGAACAGGGAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564737 lncRNA downstream 85375 10471608 ~ 10471838 (-) True CI01000340_10468562_10470670
TU564416 lncRNA downstream 203264 10350057 ~ 10353949 (-) True G492047
TU564419 lncRNA downstream 217282 10329861 ~ 10339931 (-) True G492050
TU564405 lncRNA downstream 320936 10235847 ~ 10236277 (-) True G492037
TU564259 lncRNA downstream 334391 10137245 ~ 10222822 (-) True G491908
TU564745 lncRNA upstream 66756 10679318 ~ 10679596 (-) True G492343
TU564768 lncRNA upstream 140166 10752728 ~ 10752946 (-) True G492364
TU564776 lncRNA upstream 168821 10781383 ~ 10784905 (-) False G492371
TU564777 lncRNA upstream 168821 10781383 ~ 10784905 (-) True G492371
TU564787 lncRNA upstream 175405 10787967 ~ 10788183 (-) True G492381
CI01000340_10504461_10536413.mRNA mRNA downstream 19520 10504353 ~ 10537693 (-) True CI01000340_10504461_10536413
CI01000340_10497000_10501726.mRNA mRNA downstream 54636 10496636 ~ 10502577 (-) True CI01000340_10497000_10501726
CI01000340_10485958_10487241.mRNA mRNA downstream 69883 10485925 ~ 10487330 (-) True CI01000340_10485958_10487241
CI01000340_10473924_10477962.mRNA mRNA downstream 78173 10473869 ~ 10479040 (-) True CI01000340_10473924_10477962
CI01000340_10468562_10470670.mRNA mRNA downstream 85130 10468063 ~ 10472083 (-) False CI01000340_10468562_10470670
CI01000340_10626938_10643520.mRNA mRNA upstream 14259 10626821 ~ 10644213 (-) True CI01000340_10626938_10643520
CI01000340_10648767_10660257.mRNA mRNA upstream 35986 10648548 ~ 10660257 (-) True CI01000340_10648767_10660257
CI01000340_10664417_10665925.mRNA mRNA upstream 51542 10664104 ~ 10665925 (-) True CI01000340_10664417_10665925
CI01000340_10667602_10671566.mRNA mRNA upstream 54970 10667532 ~ 10671566 (-) True CI01000340_10667602_10671566
CI01000340_10690474_10697545.mRNA mRNA upstream 77370 10689932 ~ 10699591 (-) True CI01000340_10690474_10697545
TU564413 other downstream 194809 10360197 ~ 10362404 (-) True G492045
TU564232 other downstream 529230 10021892 ~ 10027983 (-) True G491883
TU564040 other downstream 1757636 8799201 ~ 8799577 (-) True G491712
TU561564 other downstream 4229841 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 4336571 6183290 ~ 6220642 (-) True G489516
TU565620 other upstream 1061184 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 1454615 12067177 ~ 12106251 (-) False G493266
TU565795 other upstream 1496431 12108993 ~ 12116900 (-) True G493266
TU566559 other upstream 1999654 12646587 ~ 12673525 (-) True G493928
TU567402 other upstream 3600786 14213348 ~ 14320277 (-) True G494710

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00064303 True 1928 mRNA 0.44 4 NC_007117.7 42145626 ~ 42290259 (-)