Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00020731 |
| length | 902 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 8 |
| gene id | XLOC_010579 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 17189839 ~ 17200120 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051402 | neuron apoptotic process | biological_process |
| GO:0006915 | apoptotic process | biological_process |
| GO:0006096 | glycolytic process | biological_process |
| GO:0035606 | peptidyl-cysteine S-trans-nitrosylation | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0000226 | microtubule cytoskeleton organization | biological_process |
| GO:0050821 | protein stabilization | biological_process |
| GO:0006006 | glucose metabolic process | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0015630 | microtubule cytoskeleton | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0050661 | NADP binding | molecular_function |
| GO:0035605 | peptidyl-cysteine S-nitrosylase activity | molecular_function |
| GO:0051287 | NAD binding | molecular_function |
| GO:0008017 | microtubule binding | molecular_function |
| GO:0004365 | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | molecular_function |
| GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | molecular_function |
| id | description |
|---|---|
| ko00010 | Glycolysis / Gluconeogenesis |
| ko00710 | Carbon fixation in photosynthetic organisms |
| ko04066 | HIF-1 signaling pathway |
| ko05130 | Pathogenic Escherichia coli infection |
| ko05132 | Salmonella infection |
| ko05010 | Alzheimer disease |
| ko05415 | Diabetic cardiomyopathy |
| ko04131 | Membrane trafficking |
| ko04147 | Exosome |
| id | description |
|---|---|
| ZDB-GENE-030115-1 | Predicted to enable glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; microtubule binding activity; and peptidyl-cysteine S-nitrosylase activity. Predicted to be involved in several processes, including glycolytic process; peptidyl-cysteine S-trans-nitrosylation; and protein stabilization. Predicted to act upstream of or within apoptotic process and glucose metabolic process. Predicted to be located in cytoplasm; microtubule cytoskeleton; and nucleus. Predicted to be active in cytosol. Is expressed in several structures, including cardiovascular system; integument; musculature system; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human GAPDH (glyceraldehyde-3-phosphate dehydrogenase). |
| ensembl_id | ENSDART00000147739 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00022136 | lncRNA | downstream | 161179 | 17015188 ~ 17032811 (-) | True | XLOC_010573 |
| TCONS_00020715 | lncRNA | downstream | 527233 | 16665854 ~ 16666757 (-) | False | XLOC_010571 |
| TCONS_00020707 | lncRNA | downstream | 589910 | 16593349 ~ 16604080 (-) | True | XLOC_010568 |
| TCONS_00022135 | lncRNA | downstream | 603522 | 16586095 ~ 16590468 (-) | True | XLOC_010566 |
| TCONS_00020703 | lncRNA | downstream | 664018 | 16526975 ~ 16529972 (-) | True | XLOC_010565 |
| TCONS_00020736 | lncRNA | upstream | 35162 | 17235282 ~ 17240838 (-) | True | XLOC_010581 |
| TCONS_00021793 | lncRNA | upstream | 478983 | 17679103 ~ 17681952 (-) | True | XLOC_010591 |
| TCONS_00022137 | lncRNA | upstream | 504710 | 17704830 ~ 17706576 (-) | False | XLOC_010592 |
| TCONS_00020756 | lncRNA | upstream | 504710 | 17704830 ~ 17706764 (-) | False | XLOC_010592 |
| TCONS_00022138 | lncRNA | upstream | 623327 | 17823447 ~ 17824848 (-) | True | XLOC_010594 |
| TCONS_00020726 | mRNA | downstream | 5696 | 17163193 ~ 17188294 (-) | False | XLOC_010578 |
| TCONS_00020727 | mRNA | downstream | 18259 | 17163617 ~ 17175731 (-) | True | XLOC_010578 |
| TCONS_00020723 | mRNA | downstream | 31147 | 17121986 ~ 17162843 (-) | False | XLOC_010577 |
| TCONS_00020725 | mRNA | downstream | 31505 | 17122152 ~ 17162485 (-) | True | XLOC_010577 |
| TCONS_00020721 | mRNA | downstream | 77491 | 17102103 ~ 17116499 (-) | True | XLOC_010575 |
| TCONS_00020734 | mRNA | upstream | 4131 | 17204251 ~ 17207754 (-) | True | XLOC_010580 |
| TCONS_00020735 | mRNA | upstream | 34420 | 17234540 ~ 17251898 (-) | False | XLOC_010581 |
| TCONS_00020739 | mRNA | upstream | 54369 | 17254489 ~ 17258111 (-) | True | XLOC_010584 |
| TCONS_00020740 | mRNA | upstream | 62907 | 17263027 ~ 17300030 (-) | True | XLOC_010585 |
| TCONS_00020741 | mRNA | upstream | 102332 | 17302452 ~ 17316440 (-) | False | XLOC_010586 |
| TCONS_00020724 | other | downstream | 64524 | 17121998 ~ 17129466 (-) | False | XLOC_010577 |
| TCONS_00020722 | other | downstream | 73804 | 17120064 ~ 17120186 (-) | True | XLOC_010576 |
| TCONS_00020716 | other | downstream | 501723 | 16677708 ~ 16692267 (-) | True | XLOC_010571 |
| TCONS_00020706 | other | downstream | 620460 | 16573414 ~ 16573530 (-) | True | XLOC_010567 |
| TCONS_00020689 | other | downstream | 1379489 | 15813506 ~ 15814501 (-) | True | XLOC_010554 |
| TCONS_00020737 | other | upstream | 44788 | 17244908 ~ 17245047 (-) | True | XLOC_010582 |
| TCONS_00020738 | other | upstream | 47102 | 17247222 ~ 17247363 (-) | True | XLOC_010583 |
| TCONS_00020757 | other | upstream | 505778 | 17705898 ~ 17705987 (-) | True | XLOC_010592 |
| TCONS_00020761 | other | upstream | 1168794 | 18368914 ~ 18372540 (-) | True | XLOC_010597 |
| TCONS_00020762 | other | upstream | 1295420 | 18495540 ~ 18501141 (-) | False | XLOC_010598 |
