RNA id: TCONS_00020735


Basic Information

Item Value
RNA id TCONS_00020735
length 2767
RNA type mRNA
GC content 0.42
exon number 16
gene id XLOC_010581
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17234540 ~ 17251898 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGAAAACCAACGTGTGCTGAAGTCACATGTGCGCGAGTTCACAGCAGTATGAGTGGCACATGTTCTCTGGTAACTTTAGTACATTAAAGCCTCTATATATTTACTGAGTGTTCTAAAGAAGAGTCGGAAAATTTGAGGAACGCGGTTTTGTTAAACTcaGTGCTGTAGCACAACCTTATAAGTGTCAAGCATGGGAAGGAAGTTGGATCCCACTATTAAGGTGAAAAGAGGACCAGGACGTAAGGCCAGGAAACAGAAAGGAGCAGAAACTGAGCTCTCCAAGTTTTTGGCTGATGATGAGGGGCCAAAAAAACTTTCAAGCAGAGCAAGGAAACGagctgcaaagAGAGCCCAGGTTACCAATCAGCTCAAAGAGCCTAAACAAGAGGAAAAGCCCAAAAAAGGTTTTTCTGATGAGAATAAAGAGTGGCTGAAACCTGCACAGAGGAAGCGAAAGATTGAACAATCTGAGGAAGATGAGGATAGTGACAGCCAAtgggaagatgatgatgatgatgatgatgatgatgtcgaTAATGAGCAGACATTTGATCACAAGGATATAAagaatgaagatgatgatgataaagataTGGTTGATGACTATGGTGCTGATGAAGGTGATGAAAAAGACAGCGATGGAGAAGAGCTGCTGCCTATAGAAAAAGCTgcaagaaaacagaaaaaacaaacaagcatgaAACCAgaaagtgatgatgatgatgacgaggaggaggaggaggaggatgacgATGATTACAAAGAAGAGGAAAAGGATGATagtgaggaggaggaagaggatactGTTCAAGCAAATATTGATACCACAGAAAAATTCAAACTTCCTGGTGCTGCAGACAGAGCTAAGGAGGGTCTTTTACCGATGGACCTGAAGACCATCCATCAGAGGATTAAAGATAATGTGGACGTACTGTCTAACTTCAATGAGAAGAGAGAAGAAGGCAAGGAGAGATCTGAGTATCTGTCTCTACTACGTGCCGACCTCTGCACTTATTACAGCTACAACCAGTTCCTCATCAGCAAACTCATGGATCTTTTCTCTCTTTCTGAGCTGATTGATTTTCTTGAGGCCAATGAAGTTCATAGGCCGGTCACCATCAGAACCAATACCCTAAAAACCAGGAGGAGAGACCTGGCTCAGGCTCTGATTAACAGAGGAGTAAACCTGGATCCATTGGGGAAATGGTCAAAAGTGGGGCTGGTTATCTATGACTCCTCTGTTCCCATAGgagCAACTCCTGAATATTTGGCAGGCCATTACATGTTACAAGGCGCATCTTCTTTTTTGCCTGTAATGGCTCTGTCTCCCCAGGAGGGGGAGTCCGTGTTGGATATGAGCGCCGCTCCTGGAGGCAAGACCACTTATATGGCTCAGCTCATGAGGAATACTGGCATGATCGTGGCTAATGACGCAAATGTAGACAGACTGAAGAGTGTGGTGGGAAACATCCATCGCCTCGGTGTCACCAACGCTGTCATATGCAACTATGACGGCAGACAGTTCCCAAAGGTAATGGGAGGATTCGACAGAGTGCTTTTGGATGCTCCTTGCTCAGGTACTGGAGTCATTTCCAAAGATCCAGCAGTGAAAACCGGCAAGGATGAGGCTGATATTCTTCGTTCAGCTCATTTGCAGAAGGAGCTCATTCTGTCTGCTATCGACTCTGTCAATGCTGATTCTCAGACTGGTGGATACCTTGTTTACTGCACATGCTCTATTATGGTGGAAGAGAATGAGTGGGTGGTAGATTATGCTTTGAAGAAGAGAAATGTTAAGCTTGTCCCCACTGGATTGGACTTTGGCAAAGAGGGATTTACCAGATTCAAAGAGAAACGTTTCCATCCTTCTCTTAAACTGTCTCGACGATTCTACCCTCACTCTCACAACATGGATGGGTTTTTTGTGGCCAAGCTAAAGAAGCTGTCTAACACCATCCCTACTGCTCCAAAAGAAACAGAAAATCAAGAAGAATCACTTGTAATGGAGACTGCAGCTTCATCAGAGATGAAAGAACAGAAGCCTGCTTCAACTCCAGAAAAAAGCAGCTTTGAAAAGAAACAGAAATTGAATCCTCAAACATCCAAGCCACTCATCGTTAAAAAGAAAGCTGAGAATAAAAAAACTGgccccaaaaaagccaaaattGCCAAGCTGGATAGTGAAGCTGCAAAAAAGTTTGAGAAACCTAGCAAAAAACAGAAGGGAAAGCAAATGAATGGCAATCCAACAACAGAGGGGATAAAGGAGAAGAAAGAGGGCAGTCCATTcaagaagaaagaaaacaaaaccaaaaagaaGAACCTGCTGAAGAAAAAGAAGAACAGAATGGGGAAAAACAAATTTAAGAAGTTAAAAAGTATGCTTGGACAGCAAGAAAGTGGCCAGTGAACTTTAGTCATCTGACAGTAAATTGACATGGACCTATATGCTCAGGACTGGGATCTGTCAGTGGTTTGACCCAAGACAGTAAGTTAAACCAGTCCCAGCTTGCTGTTGGGGACTCAAAGATCATTCTTTAGTAACTTACACagtgaatttgtgtatttatactgCTTTTCAAGACTGTCAACCTTACTGATTCACCAAGAAGGTTACTTCAACCTTCTTGTGATATAAATgtcataaatgtaaatgtcattgtcTGCTTTTGATTCGTAAACGAAGAAACATTTAACAGAAATGCTGCAAAGAATGTGATATGCCAGTTTTTTTCATtacacttattaaaaaaaaagtaaaaaata

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0001510 RNA methylation biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0032259 methylation biological_process
GO:0070475 rRNA base methylation biological_process
GO:0005730 nucleolus cellular_component
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0009383 rRNA (cytosine-C5-)-methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-050309-7 Predicted to enable rRNA (cytosine-C5-)-methyltransferase activity. Predicted to be involved in maturation of LSU-rRNA and rRNA base methylation. Predicted to act upstream of or within RNA processing; methylation; and ribosome biogenesis. Predicted to be active in nucleolus. Is expressed in several structures, including digestive system; mesoderm; nervous system; neural tube; and pectoral fin. Orthologous to human NOP2 (NOP2 nucleolar protein).

Ensembl:

ensembl_id ENSDART00000114272

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020732 lncRNA downstream 36939 17194073 ~ 17197601 (-) False XLOC_010579
TCONS_00022136 lncRNA downstream 201729 17015188 ~ 17032811 (-) True XLOC_010573
TCONS_00020715 lncRNA downstream 567783 16665854 ~ 16666757 (-) False XLOC_010571
TCONS_00020707 lncRNA downstream 630460 16593349 ~ 16604080 (-) True XLOC_010568
TCONS_00022135 lncRNA downstream 644072 16586095 ~ 16590468 (-) True XLOC_010566
TCONS_00021793 lncRNA upstream 427205 17679103 ~ 17681952 (-) True XLOC_010591
TCONS_00022137 lncRNA upstream 452932 17704830 ~ 17706576 (-) False XLOC_010592
TCONS_00020756 lncRNA upstream 452932 17704830 ~ 17706764 (-) False XLOC_010592
TCONS_00022138 lncRNA upstream 571549 17823447 ~ 17824848 (-) True XLOC_010594
TCONS_00022139 lncRNA upstream 885744 18137642 ~ 18140068 (-) True XLOC_010595
TCONS_00020734 mRNA downstream 26786 17204251 ~ 17207754 (-) True XLOC_010580
TCONS_00020731 mRNA downstream 34420 17193990 ~ 17200120 (-) False XLOC_010579
TCONS_00020728 mRNA downstream 36871 17189839 ~ 17197669 (-) False XLOC_010579
TCONS_00020729 mRNA downstream 36915 17192664 ~ 17197625 (-) False XLOC_010579
TCONS_00020733 mRNA downstream 36975 17195185 ~ 17197565 (-) True XLOC_010579
TCONS_00020739 mRNA upstream 2591 17254489 ~ 17258111 (-) True XLOC_010584
TCONS_00020740 mRNA upstream 11129 17263027 ~ 17300030 (-) True XLOC_010585
TCONS_00020741 mRNA upstream 50554 17302452 ~ 17316440 (-) False XLOC_010586
TCONS_00020742 mRNA upstream 50554 17302452 ~ 17345377 (-) False XLOC_010586
TCONS_00020743 mRNA upstream 50554 17302452 ~ 17347727 (-) True XLOC_010586
TCONS_00020724 other downstream 105074 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020722 other downstream 114354 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020716 other downstream 542273 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020706 other downstream 661010 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020689 other downstream 1420039 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020757 other upstream 454000 17705898 ~ 17705987 (-) True XLOC_010592
TCONS_00020761 other upstream 1117016 18368914 ~ 18372540 (-) True XLOC_010597
TCONS_00020762 other upstream 1243642 18495540 ~ 18501141 (-) False XLOC_010598
TCONS_00020763 other upstream 1245397 18497295 ~ 18501141 (-) False XLOC_010598
TCONS_00020764 other upstream 1245656 18497554 ~ 18501117 (-) True XLOC_010598

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_08906943_08914821.mRNA True 2229 mRNA 0.44 12 CI01000016 8906612 ~ 8914940 (-)