RNA id: TCONS_00020739


Basic Information

Item Value
RNA id TCONS_00020739
length 1084
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_010584
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17254489 ~ 17258111 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGCGGCCACTCTGATCAAAACTGTTGCTGTGACGCACATTTAAAGCGTCATAGTTCTATGTCAACATGGCTGCACGCGCTGGAGACAAGCGTGGTCTGGAACATTTAGATGAATATGAACCAAAACAAGCTAAACAGCAAAGAAGTTTGCACGATCAGATGACTGAAAAGCGTCTTGTCGTTGTTTTAGAAGGAGCGACGCTTGAAACCGTAAAGGTTGGAAAGACATTTGAGTTGCTGAACTGTGATCAGCACAAGAGTATGATAATAAAGAGTGGCAGAGACCCAGGGAAGATTCGTCCTGATATCACACATCAGTGTCTGTTGATGTTATTGGACAGTCCTTTGAATAGAGCAGGCCTGCTCCAAGTGTACATTCACACAGAGAAGAACGTTTTGATCGAGATCAACCCACAAACAAGAATTCCTCGTACCTTTGCCAgattttgtggactcatggTCCAGCTCCTGCACAAGTTGAGTGTGAGAGCAGCAGACGGCCCTCAGCGTTTGTTAAGACTCATTAAGAATCCAGTGTCAGACCACCTGCCACCTGGATGCCCTCGATTTTCTACATCATTCAAAGCTGGGGATGCTGTATGTCCTAGAACAATTGTGCCAGATGATGGACCTGCCGCCATTGTCATTGGAGCATTTGCACATGGAGCAGTAAATGTCGACTACACAGAGAAGACCGTTTCTATCAGTAACTATCCTCTGTCTGCAGCTTTGGCCTGTGCCAAAATATGTTCAGCATTTGAAGAGGTCTGGGGTGTGTTATGACAAAGCCAAACAGATATGCACTGCCATATTTCTTGCATGATTGAAAAATAGATATTTGGACTGTGTTCTGTAGGTTCATTTGGTCCATTCATTAAAGCACAAATTGTGTCAAATTATGCCATACAAAGATAATCCACATAGAAGCAAGCTATTATAGAGCAAACAGCAAAAAGTGTTAAGAATTGAAAACTAAGTTTCTAACTTTTTGTATAGGTTTATACATTTGATATTTAACTAAGATTTGCCTTTAAGAATCACTTTGCCTTTTTTCTCCTtgcaataaacaacaacaaacaaaaa

Function

GO:

id name namespace
GO:0070475 rRNA base methylation biological_process
GO:0032040 small-subunit processome cellular_component
GO:0005730 nucleolus cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0070037 rRNA (pseudouridine) methyltransferase activity molecular_function
GO:0019843 rRNA binding molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-060421-2909 Predicted to enable rRNA (pseudouridine) methyltransferase activity and rRNA binding activity. Predicted to be involved in rRNA base methylation. Predicted to act upstream of or within ribosome biogenesis. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in Bowen-Conradi syndrome. Orthologous to human EMG1 (EMG1 N1-specific pseudouridine methyltransferase).

Ensembl:

ensembl_id ENSDART00000079497

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020736 lncRNA downstream 13651 17235282 ~ 17240838 (-) True XLOC_010581
TCONS_00020732 lncRNA downstream 56888 17194073 ~ 17197601 (-) False XLOC_010579
TCONS_00022136 lncRNA downstream 221678 17015188 ~ 17032811 (-) True XLOC_010573
TCONS_00020715 lncRNA downstream 587732 16665854 ~ 16666757 (-) False XLOC_010571
TCONS_00020707 lncRNA downstream 650409 16593349 ~ 16604080 (-) True XLOC_010568
TCONS_00021793 lncRNA upstream 420992 17679103 ~ 17681952 (-) True XLOC_010591
TCONS_00022137 lncRNA upstream 446719 17704830 ~ 17706576 (-) False XLOC_010592
TCONS_00020756 lncRNA upstream 446719 17704830 ~ 17706764 (-) False XLOC_010592
TCONS_00022138 lncRNA upstream 565336 17823447 ~ 17824848 (-) True XLOC_010594
TCONS_00022139 lncRNA upstream 879531 18137642 ~ 18140068 (-) True XLOC_010595
TCONS_00020735 mRNA downstream 2591 17234540 ~ 17251898 (-) False XLOC_010581
TCONS_00020734 mRNA downstream 46735 17204251 ~ 17207754 (-) True XLOC_010580
TCONS_00020731 mRNA downstream 54369 17193990 ~ 17200120 (-) False XLOC_010579
TCONS_00020729 mRNA downstream 56864 17192664 ~ 17197625 (-) False XLOC_010579
TCONS_00020740 mRNA upstream 4916 17263027 ~ 17300030 (-) True XLOC_010585
TCONS_00020741 mRNA upstream 44341 17302452 ~ 17316440 (-) False XLOC_010586
TCONS_00020742 mRNA upstream 44341 17302452 ~ 17345377 (-) False XLOC_010586
TCONS_00020743 mRNA upstream 44341 17302452 ~ 17347727 (-) True XLOC_010586
TCONS_00020744 mRNA upstream 219041 17477152 ~ 17541890 (-) False XLOC_010587
TCONS_00020738 other downstream 7126 17247222 ~ 17247363 (-) True XLOC_010583
TCONS_00020737 other downstream 9442 17244908 ~ 17245047 (-) True XLOC_010582
TCONS_00020724 other downstream 125023 17121998 ~ 17129466 (-) False XLOC_010577
TCONS_00020722 other downstream 134303 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020716 other downstream 562222 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020757 other upstream 447787 17705898 ~ 17705987 (-) True XLOC_010592
TCONS_00020761 other upstream 1110803 18368914 ~ 18372540 (-) True XLOC_010597
TCONS_00020762 other upstream 1237429 18495540 ~ 18501141 (-) False XLOC_010598
TCONS_00020763 other upstream 1239184 18497295 ~ 18501141 (-) False XLOC_010598
TCONS_00020764 other upstream 1239443 18497554 ~ 18501117 (-) True XLOC_010598

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_08920718_08923668.mRNA True 1407 mRNA 0.40 5 CI01000016 8920465 ~ 8924048 (-)