RNA id: CI01180000_06762114_06762590.mRNA



Basic Information


Item Value
RNA id CI01180000_06762114_06762590.mRNA
length 659
RNA type mRNA
GC content 0.47
exon number 1
gene id CI01180000_06762114_06762590
representative True

Chromosome Information


Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 6762114 ~ 6762772 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GATTGAGGAGTTGTTCAAAAACAAGGGTCACGCGTTCATGTGGAATGAGCACCTTGGCTACGTCCTCACCTGCCCATCCAACCTCGGCACAGGCCTGCGTGCAGGAGTGCATGTCAAACTGCCTAACCTCAGCAAGTACCGCCAGTTTGAAGAGGTCCTTAAGAGACTGAGGCTGCAGAAACGTGGAACAGGTAGGAACTGGAGAAAATTTAACAGCACATTACTATTACGGAGTATTGTGAACAGAAATACAGCGTGTAAACTGATGGCAATAAGAAAGTGGTGCCTCTGTTTATTAGGTGGTGTGGACACTGCAGCCGTGGGTGGTGTTTTTGACATCTCCAACGCTGACCGCCTGGGCTTCTCTGAGGTGGAGCTGATGCAGATGGTGGTGGATGGAGTCAAACTGCTGATAGAGATGGAGAAACGGCTGGAGAAAGGCCAGTCCATTGAGGACCTCATGCCTGCCCAAAAGTAGACTGCACTTCACACATTCTTCTCTCTCCACCTCCCCACACCTTTGTTAACTGATTAACTGAATGTTTGTTGACTTGTTCTTGAAAGACATGTTTTATTTAAGAGTCCTTTGTCTCTGCTCTGGTGAGTTCTTGTTACAAATACATATGTCTCAGGGCAAAACATGGATGAGAATATCTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU802688 lncRNA upstream 24213 6737599 ~ 6737901 (+) True G681708
TU802686 lncRNA upstream 26021 6735853 ~ 6736093 (+) True G681706
TU802626 lncRNA upstream 115276 6645442 ~ 6646838 (+) True G681652
TU802648 lncRNA upstream 116791 6645108 ~ 6645323 (+) True G681674
TU802662 lncRNA upstream 130185 6631653 ~ 6631929 (+) True G681685
TU802719 lncRNA downstream 74547 6837319 ~ 6837698 (+) True G681739
TU802730 lncRNA downstream 115789 6878561 ~ 6878839 (+) True G681749
TU802736 lncRNA downstream 128112 6890884 ~ 6891084 (+) True G681755
TU802783 lncRNA downstream 221698 6984470 ~ 6984674 (+) True G681791
TU802744 lncRNA downstream 222253 6985025 ~ 6985869 (+) False G681758
CI01180000_06755090_06760583.mRNA mRNA upstream 1531 6755090 ~ 6760583 (+) True CI01180000_06755090_06760583
CI01180000_06714748_06715005.mRNA mRNA upstream 47007 6714605 ~ 6715107 (+) True CI01180000_06714748_06715005
CI01180000_06704767_06711402.mRNA mRNA upstream 49958 6704767 ~ 6712156 (+) True CI01180000_06704767_06711402
CI01180000_06638215_06643427.mRNA mRNA upstream 118294 6637809 ~ 6643820 (+) True CI01180000_06638215_06643427
CI01180000_06608734_06626459.mRNA mRNA upstream 135302 6608734 ~ 6626812 (+) True CI01180000_06608734_06626459
CI01180000_06813558_06824034.mRNA mRNA downstream 49890 6812662 ~ 6824522 (+) True CI01180000_06813558_06824034
CI01180000_06828109_06832096.mRNA mRNA downstream 65059 6827831 ~ 6832110 (+) True CI01180000_06828109_06832096
CI01180000_06839627_06853120.mRNA mRNA downstream 76229 6839001 ~ 6853707 (+) True CI01180000_06839627_06853120
CI01180000_06911043_06921434.mRNA mRNA downstream 148224 6910996 ~ 6922648 (+) True CI01180000_06911043_06921434
CI01180000_06992692_07007925.mRNA mRNA downstream 229920 6992692 ~ 7008521 (+) True CI01180000_06992692_07007925
TU802641 other upstream 102568 6655846 ~ 6659546 (+) True G681667
TU802663 other upstream 127125 6632908 ~ 6634989 (+) True G681686
TU802553 other upstream 283115 6473035 ~ 6478999 (+) True G681592
TU802202 other upstream 1388352 5370410 ~ 5373762 (+) True G681268
TU802064 other upstream 1976483 4783305 ~ 4785631 (+) True G681137
TU802812 other downstream 640375 7403147 ~ 7469605 (+) True G681817
TU802830 other downstream 900651 7663423 ~ 7694381 (+) True G681822
TU802826 other downstream 931551 7694323 ~ 7694381 (+) True G681822
TU803281 other downstream 1605413 8368185 ~ 8368935 (+) True G682232
TU803553 other downstream 2273645 9036417 ~ 9038892 (+) True CI01180000_09036547_09038313

Expression Profile