RNA id: TCONS_00021298


Basic Information

Item Value
RNA id TCONS_00021298
length 5598
RNA type mRNA
GC content 0.35
exon number 8
gene id XLOC_010879
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36095582 ~ 36118514 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATTCACAAGTTTCTTGTATTttgagcttttatttattttaatttttttattgcctTACCTGTAATATGAACCCCTAAGGTTTAATGCTGAATGTTTTGTAGTTGATTCATTACTTTGTTCGTATTCTATGtttcaattttaaaaaaagaagaaacaaacacaaaatcGATTTTATCTTCACTCGATTGTTTCAATGTACGTCCTTGTTGCACAGATTACTAATGTCTGTTCAAAGATGGCGACTCCCTTGAACTGAGGGGACAAATGTGTTTATGAAGAGCACATACTACCTAAAGCCGTCTCCCATATAcaataaaaatggttttaaaaagcgTTTTTCGATCCACAGTGTTGGGTTTACGGACATGGAGTGTATTTTCAGTTGCAAGGCAGAGTAAGACAACCTTACCAGCCTTCAGCCAGGCTCAGTGCAGCTCTTACACAAACTGGACGTTCAGCCGTCATTTTAAAGGTGATGAAACTCTCCTTAACCAACCAGTGAGGCAATATGCTCGACCTTCTAGAAAGAAACAAGAATTCCCAAGTCAGCTTGAAGATCTGAAAACATCAATGCTGAAGCACGAATATGCGTCCGTCCCACTTGCACAATCGGTTGATGATGTGGTGAAGAAACTGCTTACTTTGGAGTTTGCTAATCATAGTGAAAAACTGCGTTTGAAAGAGGAACAGCTTATTGCTAAGGTGCAGAGGGATGAGAATGACCGCAGTTCAACCGAAGTCAAGGTGGCGATTTTGACAGCACGCATTCGCAACTTCCAGGAGCACTTGCACAAACACCCCAAGGATAAAGCCAACAAAAGATGGATGCTGATGACCATTGACAAAAGGAAGAAGCTTTTGAAGTTTCTCAGAAGAACCCGTTATGATTCATTTGAGAAGGTGTGCAAGGAGCTTGGAATCACATACACCTTCCCTCCTGAATACTACAGACGGGTCACTCGACGTTGGCTCGCCAAAAAGGCCTTCTGTAATAAGGTCTTTAAAGAAGTCCAGAGACTAAAagcagcagagagagagaaacagaaagCAGAGGAGGCTGAAAGAAAAAAGTCTTCATCCTCTACAAACCCACAAGAAACTGCAGCGTAGAGATGTTCAACCAGCTGCGTCATGTCCAGAAGAACAATCTGATACATGTCTGTTTTGAATCACACGTCACATTCAGAGAAAAACTAAACAGAACCATCAAATCAACCGCATGTTTTCATTAATTTACTCGTGTCTTTTGAGGCTGAGCCAAATAAAAGATCCTAAAATGAATTGTTTGGCTATCGTTCTTCAGAATACTGCTAATTATATTAGAATAACTTCACAGAACTCATTTGAAGACATTAGTTTCACACACTCAGGGGTTTTGGATTGGCAGCTGATGAAATCCTGTGTCTGTCATATGCTGAGAGTGATTGATGCATTGTGGTTGTGTGGCTTGAGCAAATGTTTCTGTTTCCTGAACTGTGAAATTTTACAAGAAATGCATGACAATCATGTGGATGATCTGAGGTCAAACTATCGGTTCTTCACTCGTGTGAGATTATTGATTGATTGTGAGGAATTCTGGTTGGTCACATTTCCTATTACAACACCGATAGACCGACCGCCCCCTCATGCAGAGTTAAGTTTGTATGCGTAAATCGGAAACGGTGCATACGCGGTGTGTTAGTGTGTGTCACAACTTCCTTTTCAGCTACAAGATCAAGAGGCTCAGAAGAACACGAGGTACTTTTCTAGCAGTTTGCTTTTTGCTTTATATTACAGAACATTTTTATGATGTAAAAATGCTGATGCTTCTTGAAATTAGCCTCATGTTTTAAACAGCCAGATTTATTTAGTTTACTGTGTCATGTTGGTTGGTTATAGACCAATCTGATATAACAGTGTGAGCAGAGCTAGTaaaaggtgattttttttaactaaataaaaatagagcaagtttaggttcagtttaagttgctttactttttaaaatttagattAATATTTCAAGTTTTATCCAGATGATTGTGAAATTGTCAATTTTTCCCCAACATTTGTAGTGATGATTTTGCATATTAAAGTTTGTGAATGTTCAAAATTCTGTCATGCAAAAAGGTTAGTTCACATAAAATGAAAAAAGGTCATTTACTCgtcctttttaagacttttattattaatatgaactAGCTTTATTAACTCcacgcttttttattttttcattagaacaaaaaataaattttcataatacattttcaaatacGTTTTGGACAATATTGTGTTATATGTAGTTCGAATGTTCCCATAGAACGAAAGTCAGTGGCGtccaaaatagcaaaaatatatatttctttttctttttaaatgtaatctTTTGCTTCTCTCAGTGTCACAATTAGaaaaattttctcttttttgccgGAGTGAACAGttcttttaaagtgatatttcactcaaaaataaaaaaattacctcCTTTATTTTCCCttgttgttttaaacctttatgagtttctttctgctgctgaacacaaaagaagaaaaatattatagaaatcaatggttacaggtacacacacacacatatatatatatatatatatatatatatattatatattattatatatatattatatatatatatgtgtgtgtgtgtgtatgtatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtaatatatatgtgtgtgtatgtatgtatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatacacacacatattcaaatacatacacacacacacacacacacattttgagtaaataattgcagatatatcttctttttttgtctaGATGAGAGAAGATTAACTTTttcaaataaatgacaaaatgtttcaaaaagtaacaaaataaatgtattttcttatttGTCACTCAATATGTCGAACACATCTCTATATCCATTTTCTCAGCTTCCTCGCTGGCCTGTTCGTTACGATTATAATGTCAAACCCAGTCATCACTCAGCCTGGTGCTGGATCTTATGGTACAAATGTGCAGACTGGAGAGTGGAGCACGGGTCTTTGTTCTTGCTGCAGTGACCTACTTGTCTGTAAGTTCTGACAGCACTCAGCATATTATTCACTTCAACTTCAAAGATGACATTTTATTGGGATATTTTACTTGTGGTTAAATTATGCTCATCTCAGTAGAAGTCATAATGTTTATTAGTTTACTGGTTTAATCAGTGACTAACCAAATGCATAatctcttttgtgtgtgtgtaggtgctcTTGGCTTTTTCTGCCCAATAGCTCTTGGCTGTTACACTGCAAACAAGTATGGTGAAAATGTCTGCCTAGCATGTGTACCTGGAGGAATGGCTGCAATGAGGACACATATGCGACTGACTTATGGAATACAggtaatgtattaaaaaaatctgCACTGTAAACCCAAATGTTCCAAATAAATTAATTGAGTTGAGTGAATTATTttatgttgtatatatatatatatatatatatatatatatatatatatatatatatattccataatttatattttttccccTTCTGCAGGGCACAATATGTAATGATGCTTTGATGACCTGTTGCTGTGGAATGTTTGAAACATGTCGAATGGCCAGAGAAATTCGTATCAGGAATGGAGAGACATAATTACAGTTCCAGACctaacattattatatattttcagaATCAGTAAATGTACAAAATAGCTTAAGGCAGGACAATTAAATATATAAGGTGAAACACTTTGACCAAACCTATTTAccaaaaatacaatgtaaaagCCTTGAATGTGTGTATATGACTGTATAGGTTGACAGCTGAAATTATCCACATGTCTCAACCTGCAGCATTAATATGTTACTGTACTGTTTGTCATATTTAATAGTCATTCAAATCAAACAGTGAAACCATTCATAGACGTATTAATATGAAATAAAGCACACCATTATATTTTGACGTGTAAACTCGCTTTCTCCAGATTCTGAAACACATGTAGTTTTGTTTTATGCTTCACAAACGAATTCCATGCATACGAGTTCCTCCCAAAAAAGAAActaatatacatacagttgaagtcagaattattagcccccgtttattttttctcccaatttctgtttaacggagggaagatttttttcaactaatttctgcacataatagttttacttacTCATTTCTACTAACTGAATTAATCTCTCTTTACCGTGATgactatataataatattttactagatatttttcaagacacttctatacagttaggctcatttaactcagactaccaatctgccagtCACTAATGATCTTTCCACTTAccagccacaccctagcaaccacttttggcaccctagcaactagATCTTTATTATAATAGCACTGACTTTAAATTGGACATACTAAAAAACACACTAAtccatactagcaacatgctaatccataggTCTACTAAACATGTTAACGACAAAcgaacatactaatcatactggaaacatactaatccatacaAAATTCATTCTAACAGCATGCCAATttatgctagaagcatgctagcaacatgctaattcatcctagaaccgtgctaatttatgttagcaactgtcttgcaactactcagaacaccttaacaaccgccaagcaacaccttagcaaccacctagcaacacattatcaatgacctagaacaccttagcaaccgcctagcaaccaatcagaacaccctagcaacaccttagcaatgaccttGAACACCtaagcaactacctagcaacaccttagcaaccaatcagaacacctgaccctagcaaccacctatcaacacctaagcaatcacctagcaacaccttagcagctgcctagcaaccactcagaataccctaacAACTACCTAGCAATgatctagcaacaccctagcaaccacctagcaacatcttagctaCTAccaagaacaccttagcaaccgcttaATATGCCTaaacaactgcctagcaactactcagaacacccttactcagaacaccttagcaatgacttAGAACACCACCTAGCAGTGCCTTacccacccagaacaccctagcaactgtctagcaacaacttagcaaaCTGCCTAGCAGCCACCtaccaacaccttagcaactgccaagcaacatcttagcaaccacctgaaAATACCTTAGCAATTGTTTGACAACTACTCAAAACACCCTaataaccacctagcaacaatctagtaataccctagcaaccacctataaAAACCTTTGCAATGACTAGGCTCACGTAAAATCTATGCgcacaaaaatctgcagatttccacagatatTTAGTCcttcattgagtctatttatttgtgtaaatgtgtttacatttgtacttaaattgtttaattcattcactaatattattgtgatatataaatagtaatattaaaatgttcatatttacaatacagtttgtaaagtaatatgttgtcttttaataaatatattatatgatagacttgctttgtttaccaaataagtggat

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005763 mitochondrial small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040718-188 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS15 (mitochondrial ribosomal protein S15).

Ensembl:

ensembl_id ENSDART00000190427

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021817 lncRNA downstream 22330 36063439 ~ 36073252 (-) False XLOC_010878
TCONS_00021816 lncRNA downstream 25289 36063439 ~ 36070293 (-) False XLOC_010878
TCONS_00022206 lncRNA downstream 73738 36021296 ~ 36021844 (-) True XLOC_010877
TCONS_00022205 lncRNA downstream 434030 35659889 ~ 35661552 (-) True XLOC_010874
TCONS_00021282 lncRNA downstream 668522 35417807 ~ 35427060 (-) False XLOC_010872
TCONS_00021819 lncRNA upstream 279991 36398505 ~ 36424101 (-) False XLOC_010881
TCONS_00021818 lncRNA upstream 279991 36398505 ~ 36424101 (-) True XLOC_010881
TCONS_00021821 lncRNA upstream 343123 36461637 ~ 36465645 (-) False XLOC_010882
TCONS_00021820 lncRNA upstream 343123 36461637 ~ 36465645 (-) True XLOC_010882
TCONS_00021822 lncRNA upstream 373003 36491517 ~ 36491840 (-) True XLOC_010883
TCONS_00021297 mRNA downstream 1806 36072329 ~ 36093776 (-) True XLOC_010878
TCONS_00021296 mRNA downstream 31439 36038130 ~ 36064143 (-) False XLOC_010878
TCONS_00021295 mRNA downstream 31439 36038130 ~ 36064143 (-) False XLOC_010878
TCONS_00021292 mRNA downstream 120328 35944222 ~ 35975254 (-) False XLOC_010876
TCONS_00021293 mRNA downstream 142793 35944694 ~ 35952789 (-) False XLOC_010876
TCONS_00021300 mRNA upstream 49393 36167907 ~ 36196700 (-) True XLOC_010880
TCONS_00021303 mRNA upstream 602716 36721230 ~ 36748374 (-) False XLOC_010887
TCONS_00021305 mRNA upstream 603113 36721627 ~ 36746837 (-) False XLOC_010887
TCONS_00021304 mRNA upstream 603113 36721627 ~ 36746837 (-) True XLOC_010887
TCONS_00021306 mRNA upstream 647420 36765934 ~ 36798783 (-) False XLOC_010888
TCONS_00021294 other downstream 120425 35945384 ~ 35975157 (-) True XLOC_010876
TCONS_00021291 other downstream 270874 35821991 ~ 35824708 (-) True XLOC_010875
TCONS_00021290 other downstream 271503 35821321 ~ 35824079 (-) False XLOC_010875
TCONS_00021289 other downstream 271636 35821321 ~ 35823946 (-) False XLOC_010875
TCONS_00021283 other downstream 671582 35420564 ~ 35424000 (-) True XLOC_010872
TCONS_00021301 other upstream 489527 36608041 ~ 36610636 (-) False XLOC_010885
TCONS_00021302 other upstream 490180 36608694 ~ 36610132 (-) True XLOC_010885
TCONS_00021311 other upstream 695709 36814223 ~ 36829185 (-) True XLOC_010889
TCONS_00021319 other upstream 1038491 37157005 ~ 37157121 (-) True XLOC_010894
TCONS_00021337 other upstream 2444013 38562527 ~ 38562644 (-) True XLOC_010904

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_02714495_02719654.mRNA True 625 mRNA 0.44 4 CI01000016 2714412 ~ 2719746 (+)