RNA id: TCONS_00021300


Basic Information

Item Value
RNA id TCONS_00021300
length 4593
RNA type mRNA
GC content 0.45
exon number 21
gene id XLOC_010880
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36167907 ~ 36196700 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCCGGAAGTGCTGTTGGTTTAAGGATTTGTTTTGATGTCATCGTAGCAAGTTAAAGCGTTGTGTATTCACATTGTATTTAGAATAACTAAGTTTAAAAGCTTATTGGAATCAACATTTTTTCAGTCTCACCTCGTTTTATTCGGTAGTTAGAGGTCGGGAAGTTCACATGAACGAGAACAACTCAAGAAAAAGAAACGCAAATCCTCAGAGGAACAGCTCGACTGTAATGATGAACAGGTTAAAATGATTTGCCATGTATAAGAGTTGAATTGAACCTTTAAACGTCGACCATGGATTGTACAGCTCTTGAGCTCGACGCTATTAAATTTGCCAAATCAGCTGTTTTGTATGATCAACGAGGGAAATACAATGAAGCTGTTTTCTACTATAAGGAGGCTGCCCAGGCCCTCATCTATGCAGGGATGGCTGGATCCAAACTAGAGAACATTCAAGACAAGGTGAACGAGTACCTGGACAGAGTACAGACTCTTCTCAGTGCTGTTCAAGCACAGAGCAGTGACCCTTTGAAGAGCAAGCATCAGCTGGATCTGGAAAGAGCGTATTTCCTGGTGACACAGGCTTTTGAAGAGGATGAGAAGGAAAACGCGGATGAGGCCATTGAGCTCTACACTCAGGCTGTAGAGTTGTGCATTCAAGCGTCCAATGAGACGTCAGATCCAGCGCTACAGGCGAAACTGAAGCAGCTTGCTCGACAGGCTCTTGATAGGGCAGAGGGACTGAAAGACTCTGTTAGTAAACCTGCAAGCCAGGACAAGCCCGGCTCATCTGCATCTAAAGGCCCTGCTCAGGTTAGACAGTTCTTTCCACTCGGTCCAGACTTCTCTATCCATGACAAAGCTCAGCCGGTGCGAGCAGCACAGTCCAGTGAGCCGCAGGGCCAGCGTTACACGGCCGAGGAGATCGAGGTGCTCAGGAAGACCTCCAAGATAAATGGGATTGAATATGTTCCCTTCATGAGTGTTGACCTGAGGGAGCGTTTTGCTTTTCCTGTTCCGTTCTCTGACAAATGTGGGAAACTGGCACTGTCGCCGAAGCAGAAAGCCATATTTTCTCGCTGGGTTCGACCTGATGACATCTGCAATAACCCCACAATGATCTTCACTGTGTCCAGCTTCAGCATCAAGCAGACGGTTGTGTCGGACTGTTCTTTTGTTGCATCATTGGCCATCAGCGCAGCATACGAGAGACGCTACAGCAAAAAGTTAATCACAAGcatCATCTACCCGCAGAACAGAAAAGGAGAGCCAGAGTATAACCCCTGTGGGAAGTACATGGTGAAGCTTCATATTAATGGCGTCCCAAGAAAGGTGATCATTGACGATTTTCTCCCGGTGGACCGCAATGGTGAGCTGCTTTGCTCCTACTCAAGTAATCGCAATGAACTCTGGGTATCGCTCATCGAGAAGGCCTACATGAAGGTTATGGGTGGATATGATTTCCCTGGCTCCAACTCTAATATTGATTTACACGCTCTCACTGGCTGGATCCCAGAGCGTATTGCTATGCACTCAGACAATCAGTCCTTTAACAAAGATGACACTTTCCGCATGCTTTACCAGAGGTTTCATAGAGGAGATGTTCTCATCACAACCGCCACAGGGGTCATGACAGAAGAGGAGGGCGAGAGATGGGGTTTAGTGCCCACACATGCTTACGCCGTACTAGATATCAGGCAATACAAGGATAAACGTTTCCTCCAGCTGAAGAACCCGTGGAGTCACCTCAGGTGGAAAGGCAGCTATAGCGAACGTGATGAAAAAAACTGGACACCAGATCTTCTCAAATACCTCAATTTTGACCCCAAAACCGCACAGAAGTTTGACAATGGGGTGTTTTGGATTATCTGGGAAGACTTGTGCCAGTATTACGACGTCATCTACTTGAGCTGGAATCCTGCGCTGTTCAAAGAGTCCTCATGTATTCACAGTAGCTGGGATGGCAAACAGGGACCAGTGAAGGACGTCTACAGTTTGGCCAATAACCCTCAGTACAAGCTGGAGGTGCAGTGTCCTCAAGGGGGCGCTGCTGTATGGGTACTGCTGACTAGACACATCACTGACAAGGATGACTTTGCTCAAAACCGGGAGTTTATTACGTTAGTGGTTTACAAGACTAATGGAAAGAAAGTTTACTATCCAGCTGAACCTCCTCCCTACATTGATGGCATCAGGATCAACAGCCCTCACTACTTAACCAAGATTAAGCTGACCAGTCCAGGAACACACACCTTTACACTCGTGGTCTCCCAGTATGAGAAACAAAACACCATCAACTACACATTAAGAGTGTACTCGGTGTGCAAATTTAATTTCTCCAAAATCCCAACACCCTTCACCAACACCAAAAGGATTAATGGCCAATGGAAGGGTGCCAGCGCTGGAGGATGTGGGAATTACAAAGACACCTACAAGAACAACCCCATATACCAGCTCAACATGGAGAAACCAGGCCCTCTGCTCATTGAACTCCGCGGCTCCAGGCAGTACAGTGTGGGCTTTGAGGTGGTGACCGTATCGACTACAGGGGATTCTGGATCATCAGGCTTTCAAAAGAGAGCGAGCGGAGATTACCGATGCGGTTTTTGCTACATGGAGGTTGAGAGTTTACCTGCTGGGATTTACAATGTCATCCCTACGACCTTCCTGCCCAAACAGGAAGGCCCATTTTTCCTGGACTTCAGCAGTGTCGCCCCGCTGCGGGTTTCTCAGCTGCAATAACGGTCCCGCACCATCCGACCACCGGATTGTTGACACAGAAGATGTTTCGCCAGCACTCATTGCTCACAGACACGCTTGTTTACCAAAAGAAATAAGCACCGATCACAGATGGTACCTGACATAGTGCCATATTTCAGtctttcccaaccctgttcctaaacacacaccaacagcaacctcttcctaatcaaccACACcagaatcaactcatcagaacataagaAGAGACACCAAAATTTGAAATGAAAAGACAATGCAGTCATCCAAAaaaatgtactgttggtgtgcctccagcaacagggttgggaaacactgccatatttgacattttttagtGTGTAATAGTATGCCGCTGCAGTGCCATTTTCAGAAGAAGCGTGTTCAATCAGCCAGAAAACACACTTCTTTTAATTCTGCAGTCCGAAGTTGCATTCAAAGACGATGATATGTGTAATTTGTTTGTGCgcatctgagtgtgtgtgtgtgtgtactggttttggtggtttatgaggacacacatTTGTATAAGGTCACATGACCTAGGTATAACAATGTCCTTACAATtcaaaactgttaaaaattaTACTTAACAGGGTCTTCTGCcattcaaaatttgccacaaGTTTCCTGTAATGCAACAGGTGTCAAACTTGGTTCCTcaagagccgcagctctgcacagtttagttccaaccctataTAAACacccctgatcaaactaattaagtccttcaggcttgtttaaaacctacaagtaagtttgttggagcagggttggaataaactgtgcagggctgagggccctccaggaattgagcttTGACATACAGGTTttaacagtataaaatacattaaacctGTGGAGCTTCCTCACAATGCACCAAAAATCAACATGGGTGTATGTTGTGGTTTATGAGAACACAATCTAACTTAACAGGgtcttttcacatttaaaatttgccacacttttaaaagtataaaatacattacacctaaagagcaggggtgttcaaactcggttctggagggccagtctcctgcaaagtttagttccaaccctaatcagacacacctgggctagctaatcaagctcttactaggctttctagaagcaTCTTTGcagctgtgttgaggcaagttggactaAAAcgtccaggacaccggccctccaggactgagcttgGAAACCTCTGccatggagagtcctcataaaccaccacaACCAAcctgtgtgggtgggtgtgtgtgaatatatgaTCTGATATGACTGTTTTTCACTCAGGAGACTGCAATAAAACAGGGATGTATATTAATGATGTCTGATGAGAGATCGGAGGGATCTGTACGCAGATTTCTGTGTCTCTATATTAAGGGCTCTTCCTCTGGTCTGTTTGCTGATGTGCAGGTAAGCAGAAAGACGTTCTGTTGCAGGGCTTATTTGTTCAGTGGGCTAAGAACGAGTGCACTTTtatcaaaaaggaaaaaaagaagataGAAAGCAAATATGATGCACATCCATCTCTGAAGCATCAGGTTTTGTTTTAACTCCCAATCATGTGCATCAAATGTCAGCTTTATTTATATCTAGCAGCACAGAACTGTATTTACAGGCCATATCGGCGATGACCTGGATGTTTTTACTTAGTAAACCGACATGCATGACTGACGATGATGCTCCACATCAGTGACTGTGCAAATGCTTAAGGTTTTTTTGTTTCATGATTTTGATTTCTGTTCTTATTATGCTCTGAAATATTTATTTGCAGAGATTAAAATGAAAGTGTATGTGTTATCagacattgtttttttctttttttttcctttggtaAATTAAATGACACAATGAATAATACT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-111111-1 Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human CAPN7 (calpain 7).

Ensembl:

ensembl_id ENSDART00000172324

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021817 lncRNA downstream 94655 36063439 ~ 36073252 (-) False XLOC_010878
TCONS_00021816 lncRNA downstream 97614 36063439 ~ 36070293 (-) False XLOC_010878
TCONS_00022206 lncRNA downstream 146063 36021296 ~ 36021844 (-) True XLOC_010877
TCONS_00022205 lncRNA downstream 506355 35659889 ~ 35661552 (-) True XLOC_010874
TCONS_00021282 lncRNA downstream 740847 35417807 ~ 35427060 (-) False XLOC_010872
TCONS_00021819 lncRNA upstream 201805 36398505 ~ 36424101 (-) False XLOC_010881
TCONS_00021818 lncRNA upstream 201805 36398505 ~ 36424101 (-) True XLOC_010881
TCONS_00021821 lncRNA upstream 264937 36461637 ~ 36465645 (-) False XLOC_010882
TCONS_00021820 lncRNA upstream 264937 36461637 ~ 36465645 (-) True XLOC_010882
TCONS_00021822 lncRNA upstream 294817 36491517 ~ 36491840 (-) True XLOC_010883
TCONS_00021298 mRNA downstream 49393 36095582 ~ 36118514 (-) False XLOC_010879
TCONS_00021299 mRNA downstream 68415 36095663 ~ 36099492 (-) True XLOC_010879
TCONS_00021297 mRNA downstream 74131 36072329 ~ 36093776 (-) True XLOC_010878
TCONS_00021296 mRNA downstream 103764 36038130 ~ 36064143 (-) False XLOC_010878
TCONS_00021295 mRNA downstream 103764 36038130 ~ 36064143 (-) False XLOC_010878
TCONS_00021303 mRNA upstream 524530 36721230 ~ 36748374 (-) False XLOC_010887
TCONS_00021305 mRNA upstream 524927 36721627 ~ 36746837 (-) False XLOC_010887
TCONS_00021304 mRNA upstream 524927 36721627 ~ 36746837 (-) True XLOC_010887
TCONS_00021306 mRNA upstream 569234 36765934 ~ 36798783 (-) False XLOC_010888
TCONS_00021308 mRNA upstream 611224 36807924 ~ 36834535 (-) False XLOC_010889
TCONS_00021294 other downstream 192750 35945384 ~ 35975157 (-) True XLOC_010876
TCONS_00021291 other downstream 343199 35821991 ~ 35824708 (-) True XLOC_010875
TCONS_00021290 other downstream 343828 35821321 ~ 35824079 (-) False XLOC_010875
TCONS_00021289 other downstream 343961 35821321 ~ 35823946 (-) False XLOC_010875
TCONS_00021283 other downstream 743907 35420564 ~ 35424000 (-) True XLOC_010872
TCONS_00021301 other upstream 411341 36608041 ~ 36610636 (-) False XLOC_010885
TCONS_00021302 other upstream 411994 36608694 ~ 36610132 (-) True XLOC_010885
TCONS_00021311 other upstream 617523 36814223 ~ 36829185 (-) True XLOC_010889
TCONS_00021319 other upstream 960305 37157005 ~ 37157121 (-) True XLOC_010894
TCONS_00021337 other upstream 2365827 38562527 ~ 38562644 (-) True XLOC_010904

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_02662862_02676190.mRNA True 3760 mRNA 0.45 21 CI01000016 2661658 ~ 2676298 (+)
bowfin (Amia calva) AMCG00002510 True 6944 mRNA 0.44 22 CM030136.1 17137176 ~ 17158023 (-)