RNA id: TCONS_00022256


Basic Information

Item Value
RNA id TCONS_00022256
length 6422
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id XLOC_011028
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 46087489 ~ 46097432 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttaataacaacaataataaataaaaaggtctCATCTTTGACTTTTGCAGGTCTTCCACAAAGTTGGGTTCGAGTCGGGCAGCCATTCATTaaatggatttttattttatttaaacgtgtttcttaataaaatgtttaaatggtattgttaaaaataataataataacaataataaaaataataaataaataaataaaaaggtctCATCTCTGACATTTGCAGGTCATCCACCAAGCTGGGATCAAGTCAGGCGGCCAGCATGGAGAGCAGTTCCCTGACCGGCAGTCTGTCTCTGGGCTCAGACATTCCTCACTGCCAGTGCTGTATCTCCTATGAAGCCAGACTCAAGCGACTGTCCTGCGGTCATCTCTACTGCGACCCCTGCTCCGATCAGATCGTCAACCTGGCTTTTGAGGACATCGAAGGTCTGGCTGAATATCCCTGCCCCATGTGCAAAACCCTGCGTCACCTGGGTGGCTTTGTTCCCATACACGGCTACCCAGGAATGACCCACTGTTCGCCCTTCGGGAGTCAAAAGCAGCAGCTGGTTGAAGAGAAAGGAGGCCTGTGGGAATGACTGACTGTGTTCATGGATGGGTTTGTTTCAGGACATCACATGGAAATAAAACCTGTACCAAACGATACCAACAACAAGATATACCAGGAAGCATCATCTCCTTCCttattaaagtatatttaaagaaaaagctcatgcaaaaatgaaaatagccccatcatttactcaccctcaagtcatCTTCAGTGTATATGACTTTGTTTATGTCAGACGAACACAAGCggagtagttttaaattttatccTGGCTCTACCATCCTGTAACAAAGGACACTGGACAACGGAGATGAGGGATCCACGTGCAGATCATTTTAAGCTTAGTCAGACAGGCATTGGTCAGAACAGGAACAAACCGGAGcatacacaataaaaaaagagtGAGGTCAAAAAACAGGCAAAAGATAAAGACCAACAACACGGCAGGACAGACAGGGAAATACGCATAGAATTGCTTAACAAGGAAAACAAGTCTCCgcaatgtgcgtgtgtgtgtgtgtgtgtgtgcgaggggTGAATATAAACTCCAGCTAATCAGTCCGTGATAAATTATCAGCTGTGTGCGAGTAATTAGGGGatatcaggaactggtgtgtgtaagGTACATAATGGTATTTATAGTCCAGTTCAGTGACAGatctgtagttctccagcgatctgcatggattagatcgctggtgaatCGTAACACATGCTGTATAATGATGTTGGATAGTGGCTTTTTTTTTGAAGCTTCTAAAATTAAGTCCATAAATCGGTCACCAAACTAACCCATACACTGCTAGGTAGTTAACGCACactcaaacaaatatttttgctgcttgttcaaacagtttatttattataatgagctgaatcaacaattattattagttcttcattgttttatgttcaatcaacttagtttttataaacaattaagttaacttgaatgatttgtgttaggacaacataaaggaatctTGTGGAACCCTGAATTTTTTATCTTATAAAGCAGGCCGATGTGCTAGGGTAACATaaatatcatttttaaatgttgaacTCCAATCATTCACTTCTGGTGCACACCGAACGCATGTGATGTGCGACTGACGTATACAACGTATGACGTAAGACGGGTAGACACATGTACAGTATGTGGCATTATAAGAGTAACTTACTGTATAAAGTTATAAATTAATGCCAGGATAACTAGCTTTCTTGTTTGACGTTATCTTTGTTGGTAAACAAACTATGTAGTAATGGTTCTTAGTAGACGGATTCCCAGGAGCTTCAACTACGAATGCGTCTTAAAGCTGAAATGATCACTGAGTCAAGTGATCGTCGTTACCCGTGCGCattgtcatgcatttatacttctgcattctgtttgtgttgctctgcaataacacttccaaaatgcaAGCTGGCAgtgggtttttatgttcctctatgTCGAGTTTCTTTAATGCTAcctacaagtagctcaaacttgtTCATTCAAAGgcgggaactggcggacgtgcaacaactttaatcataaggtaaacaaaacCAAAGTCTCCACAATTCTAACACTTGTTAAACACTCACTCCAACAGGCTCGCTCCTCTCCCACGGATCTCGATCCCACCCAATCATCAACAATGCCAAACTAACCAaccacagagcttgtgctatatATCGTGACATCTAGTTACATTTATTGAGAGGTGAGCATCTATGTCAGCCATGGCGAAGGGTAAGCGACTGTACGAAGGCTGCCCTGGATCATCCACttgcacttgatgcagaagtataattcagccttTACATCATACGTCATATACTGTATGCAAGTCACGAATAACATGCATTCAGCTATGGGGTAATTtgatcattaaaaaaatttaaataacacatCAATCTGCTTCATAAGACATGCGTTTATCCCTTATCAGCGTATGAGTTGGTTTGACGATAGATTTATGCGCTTTcgaaagcttcaaaataaaagccgtTATCCAACACAATTATACAGCATGGAAGAATACAATTTAAAACTACTCTGATTGTGTTCGTCTGACTGGAACAAGTCATATACACTTGATGCTTGAGGGTGATTAAATTATAGGGTAACTTTCATTATTTGGGAGCACTATTCCTTTAAAACAGAAAGGTTTCTCATTTTAATAGGTCTCCTGTAAAAGGTTTACATTCATCCAAgtccaaaaaacactttcatttttcaTCATATCAATTGTAGCATCAGCTTTTTTCTCACAAGTGTCTGAACAGTTTATATCATGATAGCGTACTGGACCAGGTCAAATACGTAGTGGCAGGGGCGCCGCTAGCTGAACAGGCCCTATAATAACATTTCATTTGTGTCGCAGACTTAAGTGAAAAGcaggggttgggggggggggggtgtatggTGTTTTAGGGCTGACAGGGATGTTAGGGCTAGTGGGCCCCAAAACAGTGTGGGCCCTTAGAATTGTCCTAACTTTTTCCCCCTTAGCGGCACCCCTGCGTAGAGGACATTGCAATGCCCACTAAGGTAACTCCCACactactgtgacagttgggttgaAGGATGTGTAGACAATCGTCCACTACGTAGTGGACCTGGTCTAGTACGTCATAAAGCTGCAGGCTGCAGCAAGGACTGTCTCGAACAGGGGAgcccaaactcggtcttggagcgctggtgtccagcaaagtttagttccaacctcaatcaaacacacctaggctagctaatcaagctcttactaggctttctagaaacaaccgtgcaagtgtgttgaggcaagatggagctaaaatttacaggacaccggccctccaggacaaaagtttaggcacccctggTCTCGAACAAGGACCTGGTCTCTCTAAACTCCACCTTCCTGACAGCCTGCtgctgttctgattggtcagatggaccAGTGTTTTGTGATTGGTCGACCACATGTCTGAATCCAAATGTTGATTAGCGCATCTGAGTTTGGATCACACaaagaaatgtaactattttacgttttgtcaatttagtggctaattcgagttgagtcgtacgaaaatgtcCAATTTTTacaaggaggcgtggcaccaaaccccacccctaaacccaaccatcattgagtatgtttacatggacaccaataatccaattttaatacgattaGGCCAATACTCTGATCAAAAATTACCATGCAAACAGAGATTGTTAATTAAtccaattaaggtcataatcgaactaaacagaaatcataTTAAGACTACTGTAGTATGACGATTTTAAtcacattattaaagtgcagtacagacatgtaaatacCACAATCAAACCATGAgtaggatttttgccgcattttgcgacaggagagtctatacacacacggctgtttgacactattttctGCACCTACCAGTGAAGGACCACATACACCTGTATCACCAAATGCCAAGGTTTTCTTCCCCCATACAGCGTGTGGTATCAAGTTCCATTAAAACCACACTCTTCCAGCAACTCATACTCACCTCCAATATCTCATTTGacacggggggcatgcatgaaatgttcctgaatgaaagtgaaagtgccaaactccAGTTAaagtttacaaattaaaaatgaaacacccaaaattacatgaaacggcagaggaaatgtggatagcgtggtgatgcAGTGACAATAATCGatttatgtgctataacatgtaaaacgggatcatgaaaggaacattcagaaagcaactcatgtaaacaccttaatcatattattgtcttattcagattaaggcaaatagtttgATTATTGATGTCCACGTAAACATAGTCAAtgattcatacgaattagccacaaaatcaaaaagaTAGCATTTGGCGTTTCAGCACTTgtaaacagtaatataaacaaacaacaatagTTTCTCAGCTTATTATATCAATTCAGGAGCAAATTCTCATCCGTTTGAAAATGGATTTGCAGTAAACAGCCTATTTTCAACATGTTGACAACAAAAACCAAGCTATTCCGGTCTGAGCCACAAATAAGgtgtctgaggccccgtttacactagtgagttttagttttaaaacggtgttttagatcaaaaacgatccgtgCAAAAAACTGcacaatggtgcctaaaacagacaatagagcaaacaacgctcccatttctgtgtccatgttgttgtttacagtgaaggctggtctgctgtcttccggtagcgtcaaagccatgtgttatagtcatgtgataggggctcgACGattaagggaaggatacgcaatgacacaaaagccccaatcaggcagcaaatgtcagcagccccgcctccgttttcacatgtctccgttttcccccatccacactgagacggagcagcagcgttttagaatgaaaatggaaTCTTCagcgttttcggcgctcgaaaactccggcgtagtgtggacggatggtgtaaccgttgcaaaacttatgcgttttcaaactaaaacgcattattgtaaacagggcctgagggTCAATGCATATGTTCACAGGCAGTCAATGAAGACCATAGACAGGCTTTTGTTACATACAGTACGTAATGCTTGTGCAGGAAGACTGGAATTATCGCAGTTCAGAATTGGTTCTCTCTTTTATCATACACCTTTTACAACAGCTACAATATGAAATATACTATCTGAACAAGCATAAAATGGAGGCACTGAAAGTTTAAAGTGTGCTACTCTAAACCAAATGATCAATTCAGATCTGTCATTTTCTGTGATCTGCTATTGCTTTAAAGGGTCTAGGCTTCATATCgatcattattttaaaatcctTTTCTGTTAAATGAGAATACATTAAATGAGACCTGCGTCGTAAGTGAATCTGACTGATATCATACGCTCTCTAGTGCCATAATTGAGGAAAGGTAAAGGAAGTGTTTTACTTAAACTACCTGCTGTTAGTCGATTCATTTTGAATTTTgctgtattttatgttttttaatgccAGATGATATACATTAGTGAAGcttttctgtatttttgtaatAAGTGCCATTGACGTAAACGATTATTTATGGAGTCATTTCACAATTGATTGATTTGAAATGTTGTAATGCTTCTTGTAAAGTGCTCATGTTGTAAATATCTCTATTTTGATAAGAAATCGAACATGTCAGGATCTCCTGGGCTCGTttgtcatatatttttaataaccattgttaagaaattcaaaacatgaaATTGTAATTAGGAACTTTAAGatgcattttatttatctatgtgcCAATGAAGGTCGCTATAAAAGAATAagcaatgaaaaaaagaaaagaaaataggtAATCATTCGCCCTTGTGCCAGGTGCAAGGATGAAAGTACAAAACAAGTTACATGTTAAGGCAGAAGCATTGGGCAATTTCATTAAATGCAAGACAATAAACATTTGCGCAAATTCAGTCTTGTGAAATATGTTGATGCAAGTCCACTTCTGCTGAATCTCTTAAATCACCACATACTGATATGCATGGAAGCTTTTGTCCACCACATAATAATactaaaagttttttaaaaagttgactTTGATCATAcaaattcaacttttttttaaaatcacaatcgtgtttttacatatctatagtttaTAATTAAACATTGCAAGACATATAAACTCACATTTCAGAGAAAAAGTCAAAATAGTGAGATGTTAAAGGTGAAATAGGTGATTCATTGAACATTTTTGTTAGACTGGTTGAAGGTTTCTTCACATCCTGATTGCAGTCATGATGTGGTACAaatgcatttatatgtattttattattctgTGAAAAGTGTTGGAGCATGAAATGTTTGTCTATTTAAAACGTTTAGTAAAAACAT

Function

GO:

id name namespace
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0097458 obsolete neuron part cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022252 lncRNA downstream 93300 45982473 ~ 45994189 (-) False XLOC_011027
TCONS_00022251 lncRNA downstream 93300 45982473 ~ 45994189 (-) False XLOC_011027
TCONS_00022244 lncRNA downstream 96647 45982473 ~ 45990842 (-) False XLOC_011027
TCONS_00022246 lncRNA downstream 96647 45982473 ~ 45990842 (-) False XLOC_011027
TCONS_00022248 lncRNA downstream 96647 45982473 ~ 45990842 (-) False XLOC_011027
TCONS_00022257 lncRNA upstream 102215 46196125 ~ 46203345 (-) True XLOC_011029
TCONS_00021535 lncRNA upstream 256318 46350228 ~ 46393111 (-) False XLOC_011032
TCONS_00022258 lncRNA upstream 256318 46350228 ~ 46393119 (-) False XLOC_011032
TCONS_00021534 lncRNA upstream 256318 46350228 ~ 46393285 (-) True XLOC_011032
TCONS_00022259 lncRNA upstream 302092 46396002 ~ 46431086 (-) False XLOC_011033
TCONS_00021529 mRNA downstream 169806 45912647 ~ 45917683 (-) False XLOC_011026
TCONS_00021530 mRNA downstream 170167 45914480 ~ 45917322 (-) True XLOC_011026
TCONS_00021528 mRNA downstream 177439 45904153 ~ 45910050 (-) True XLOC_011025
TCONS_00021526 mRNA downstream 232607 45796602 ~ 45854882 (-) False XLOC_011024
TCONS_00021527 mRNA downstream 232607 45797026 ~ 45854882 (-) True XLOC_011024
TCONS_00021537 mRNA upstream 424204 46518114 ~ 46525135 (-) False XLOC_011034
TCONS_00021538 mRNA upstream 424760 46518670 ~ 46525155 (-) False XLOC_011034
TCONS_00021539 mRNA upstream 424850 46518760 ~ 46524842 (-) False XLOC_011034
TCONS_00021542 mRNA upstream 436334 46530244 ~ 46567136 (-) False XLOC_011035
TCONS_00021543 mRNA upstream 460070 46553980 ~ 46558521 (-) False XLOC_011036
TCONS_00021521 other downstream 841747 45242381 ~ 45245742 (-) True XLOC_011019
TCONS_00021515 other downstream 894337 45186673 ~ 45193152 (-) True XLOC_011016
TCONS_00021514 other downstream 912929 45174446 ~ 45174560 (-) True XLOC_011015
TCONS_00021511 other downstream 943117 45140858 ~ 45144372 (-) True XLOC_011012
TCONS_00021510 other downstream 953010 45130921 ~ 45134479 (-) True XLOC_011011
TCONS_00021532 other upstream 122898 46216808 ~ 46216909 (-) True XLOC_011030
TCONS_00021533 other upstream 246633 46340543 ~ 46340657 (-) True XLOC_011031
TCONS_00021580 other upstream 1849233 47943143 ~ 47943257 (-) True XLOC_011054
TCONS_00021592 other upstream 3901568 49995478 ~ 49995594 (-) True XLOC_011068
TCONS_00021599 other upstream 4544760 50638670 ~ 50638786 (-) True XLOC_011073

Expression Profile

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