XLOC_011032


Basic Information

Item Value
gene id XLOC_011032
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 46350228 ~ 46393285 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021535
GGCCAACTCACAGACGTCCATCCAACTGTTTCAGCACAACAACATCAGTTCACTCACATTAAGGAAGAACACATCAGAGATTCTTCAATCTCTAGAAAACAAACATCCTACACCTCTGGAGCAATATGAAGTGCAGGCCAACCCAGAGCCAAGGACACCTTGCCATGGCAAAACAAATGGAGAGACAACTGTGTCCCTGAGGTCAGAACAGGTGCTGCGGGACCGGCCAGAGTCCACCGGGACAGCTGTTCTATTCCTGTCCGGAAAAGAGCCGGATCTGCTCAGAGCAATGACAGATGGACACGAACACCAGCATGGAGAGAAACCTTCAAACAACATCAAAGAGCTTACACTCGTGGAAAAACACGGCGAATCATGCAGCTGCAACACCCCGCGCCAATTAACATGACTGCGACCTCACACATCCGGGTCAGTGCACCCGACCGGGCCAACAAAGCCAGAGCCGGTCCCAGAATGCGAGTTCCCAATTACCCTTGAGTGAGATCCACACAACATAATGCTGCAGGTGAGAAGTTGGATAGGGCTTCTGTGAGGCACTGGCACAGACACAATCAAGCTCTGTGGCACCGGCTTCAAATCGCTGCGTGTCTGCGATGAAAAACGCTGAGGGCACAAGACAAAACAGTACACAGACTAATGAATTCGGTGCATGTGTAATTTATGATGAGCAGACGGGCCCCTCGATTCTCTCTGGTGTTCAACTTCATGCTACAATTGCAATTAATTACGCTTTTGAAAGCCAGTTATCAAGACGCAAAGGCTAAGATGGCATTTGAGGGCATTCGAAGTGTCAAAACCCGatggtaaaaatgtataaaaataaggTTTGGTTAGTTAACTTTTAGGTATTTTGCCTTTTTGGTTATCGTCTATCATGTAATCTGTTATAGTGTGAATGCAAATTGTCTGCAAATTCAAAGATCTAAGTGTCAATAAAATAAGTTCTGTGAGTAAATTAAGGTAAATTGGTTTTTAGTCTTTGGTAGTCATTTCTGCGGCACCAGGGGAGGAGTGGGGAATTGGTGCCTTGCTTAAGAGacttggggccctatcatacacccagcgcaaaaaggtgcaagatgtgtttggtgctatttgttgctattttcagaccagcacaacagtaattttcatgttttgcgcaaccttgtttaaatagcaaatccatttgtgccacttgtGGACTATAATGACATATTGACTATTATATTAAACCAAGTATATAAGTAAATTGGTAAAAATTTGGGTCACATTTCACTGTTTTAACAAaccaacataggttcattctgaaatgtagccctatatatacgtttctggagatctcgaattatttagccagaggcagg
>TCONS_00022258
CACAAGCTGGCCAACTCACAGACGTCCATCCAACTGTTTCAGCACAACAACATCAGTTCACTCACATTAAGGAAGAACACATCAGAGATTCTTCAATCTCTAGAAAACAAACATCCTACACCTCTGGAGCAATATGAAGGCCAACCCAGAGCCAAGGACACCTTGCCATGGCAAAACAAATGGAGAGACAACTGTGTCCCTGAGGTCAGAACAGGTGCTGCGGGACCGGCCAGAGTCCACCGGGACAGCTGTTCTATTCCTGTCCGGAAAAGAGCCGGATCTGCTCAGAGCAATGACAGATGGACACGAACACCAGCATGGAGAGAAACCTTCAAACAACATCAAAGAGCTTACATTTATTCACTCCGATGGGCAATTTCCACACGCACAGACTCGTGGAAAAACACGGCGAATCATGCAGCTGCAACACCCCGCGCCAATTAACATGACTGCGACCTCACACATCCGGGTCAGTGCACCCGACCGGGCCAACAAAGCCAGAGCCGGTCCCAGAATGCGAGTTCCCAATTACCCTTGAGTGAGATCCACACAACATAATGCTGCAGGTGAGAAGTTGGATAGGGCTTCTGTGAGGCACTGGCACAGACACAATCAAGCTCTGTGGCACCGGCTTCAAATCGCTGCGTGTCTGCGATGAAAAACGCTGAGGGCACAAGACAAAACAGTACACAGACTAATGAATTCGGTGCATGTGTAATTTATGATGAGCAGACGGGCCCCTCGATTCTCTCTGGTGTTCAACTTCATGCTACAATTGCAATTAATTACGCTTTTGAAAGCCAGTTATCAAGACGCAAAGGCTAAGATGGCATTTGAGGGCATTCGAAGTGTCAAAACCCGatggtaaaaatgtataaaaataaggTTTGGTTAGTTAACTTTTAGGTATTTTGCCTTTTTGGTTATCGTCTATCATGTAATCTGTTATAGTGTGAATGCAAATTGTCTGCAAATTCAAAGATCTAAGTGTCAATAAAATAAGTTCTGTGAGTAAATTAAGGTAAATTGGTTTTTAGTCTTTGGTAGTCATTTCTGCGGCACCAGGGGAGGAGTGGGGAATTGGTGCCTTGCTTAAGAGacttggggccctatcatacacccagcgcaaaaaggtgcaagatgtgtttggtgctatttgttgctattttcagaccagcacaacagtaattttcatgttttgcgcaaccttgtttaaatagcaaatccatttgtgccacttgtGGACTATAATGACATATTGACTATTATATTAAACCAAGTATATAAGTAAATTGGTAAAAATTTGGGTCACATTTCACTGTTTTAACAAaccaacataggttcattctgaaatgtagccctatatatacgtttctggagatctcgaattatttagccagaggcagg
>TCONS_00021534
gcctcttgttacagttatgaaattgattgataacaagcaggaaatgttcatgggccaatgacatcaccaaaTTGAAAGTAcactgataaaaataaataaataaaataaaaatgcaatgctGACATTCCACCACTAGAGGGAAGTAGCTACTAAATCCAGCAGGGGACACAAGCTGGCCAACTCACAGACGTCCATCCAACTGTTTCAGCACAACAACATCAGTTCACTCACATTAAGGAAGAACACATCAGAGATTCTTCAATCTCTAGAAAACAAACATCCTACACCTCTGGAGCAATATGAAGTGCAGGCCAACCCAGAGCCAAGGACACCTTGCCATGGCAAAACAAATGGAGAGACAACTGTGTCCCTGAGGTCAGAACAGGTGCTGCGGGACCGGCCAGAGTCCACCGGGACAGCTGTTCTATTCCTGTCCGGAAAAGAGCCGGATCTGCTCAGAGCAATGACAGATGGACACGAACACCAGCATGGAGAGAAACCTTCAAACAACATCAAAGAGCTTACATTTATTCACTCCGATGGGCAATTTCCACACGCACAGACTCGTGGAAAAACACGGCGAATCATGCAGCTGCAACACCCCGCGCCAATTAACATGACTGCGACCTCACACATCCGGGTCAGTGCACCCGACCGGGCCAACAAAGCCAGAGCCGGTCCCAGAATGCGAGTTCCCAATTACCCTTGAGTGAGATCCACACAACATAATGCTGCAGGTGAGAAGTTGGATAGGGCTTCTGTGAGGCACTGGCACAGACACAATCAAGCTCTGTGGCACCGGCTTCAAATCGCTGCGTGTCTGCGATGAAAAACGCTGAGGGCACAAGACAAAACAGTACACAGACTAATGAATTCGGTGCATGTGTAATTTATGATGAGCAGACGGGCCCCTCGATTCTCTCTGGTGTTCAACTTCATGCTACAATTGCAATTAATTACGCTTTTGAAAGCCAGTTATCAAGACGCAAAGGCTAAGATGGCATTTGAGGGCATTCGAAGTGTCAAAACCCGatggtaaaaatgtataaaaataaggTTTGGTTAGTTAACTTTTAGGTATTTTGCCTTTTTGGTTATCGTCTATCATGTAATCTGTTATAGTGTGAATGCAAATTGTCTGCAAATTCAAAGATCTAAGTGTCAATAAAATAAGTTCTGTGAGTAAATTAAGGTAAATTGGTTTTTAGTCTTTGGTAGTCATTTCTGCGGCACCAGGGGAGGAGTGGGGAATTGGTGCCTTGCTTAAGAGacttggggccctatcatacacccagcgcaaaaaggtgcaagatgtgtttggtgctatttgttgctattttcagaccagcacaacagtaattttcatgttttgcgcaaccttgtttaaatagcaaatccatttgtgccacttgtGGACTATAATGACATATTGACTATTATATTAAACCAAGTATATAAGTAAATTGGTAAAAATTTGGGTCACATTTCACTGTTTTAACAAaccaacataggttcattctgaaatgtagccctatatatacgtttctggagatctcgaattatttagccagaggcagg

Function

GO:

id name namespace
GO:0035803 egg coat formation biological_process
GO:0035036 sperm-egg recognition biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:1990511 piRNA biosynthetic process biological_process
GO:0009988 cell-cell recognition biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021535 False 1367 lncRNA 0.44 4 46350228 46393111
TCONS_00022258 False 1407 lncRNA 0.44 4 46350228 46393119
TCONS_00021534 True 1578 lncRNA 0.43 4 46350228 46393285

Neighbor

gene id symbol gene type direction distance location
XLOC_011031 CU469499.1 coding downstream 9571 46340543 ~ 46340657 (-)
XLOC_011030 BX537142.1 coding downstream 133319 46216808 ~ 46216909 (-)
XLOC_011029 NA coding downstream 146883 46196125 ~ 46203345 (-)
XLOC_011028 NA coding downstream 252796 46087489 ~ 46097432 (-)
XLOC_011027 NA coding downstream 356039 45982473 ~ 45994189 (-)
XLOC_011033 NA coding upstream 2717 46396002 ~ 46459850 (-)
XLOC_011034 tmem176l.1 coding upstream 124829 46518114 ~ 46525155 (-)
XLOC_011035 si:dkey-152b24.7 coding upstream 136959 46530244 ~ 46567344 (-)
XLOC_011036 si:dkey-152b24.8 coding upstream 160695 46553980 ~ 46558708 (-)
XLOC_011037 zgc:174938 coding upstream 174123 46567408 ~ 46573211 (-)
XLOC_010626 CR392024.2 misc downstream 25455053 20895112 ~ 20895175 (-)
XLOC_011041 NA non-coding upstream 227918 46621203 ~ 46622443 (-)
XLOC_011045 NA non-coding upstream 403127 46796412 ~ 46798742 (-)
XLOC_011046 NA non-coding upstream 412952 46806237 ~ 46810212 (-)
XLOC_011049 NA non-coding upstream 909161 47302446 ~ 47304669 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_01289962_01294748 NA coding CI01000027 null 1289860 ~ 1294815 (-)