XLOC_011034 (tmem176l.1)


Basic Information

Item Value
gene id XLOC_011034
gene name tmem176l.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 46518114 ~ 46525155 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021537
GCCTTCCGGACCAAAGTCGGGAAGTTGGtaccttcttttttgtttaaaagaacCGGTTCACAAATTCAATTCACTGATTTCATTGCGTCATCGCGTAAATTCGGTTATTTACAACCCTAAAAGTAGTTTCTATTTACTTTAAACAGTGCAGTAATGTATTTAAATCTGTGTTTTAAAGAAAGCCTTTATTAGGTGGTCGGCTGTCTGAATGAAACGCTGTGATGCAGTCTGTGACGATGCAGTTTGTGAACTGATTCAGAAGATCTGTTTAAAGTAACCGACTCAACAGAACGATTCGTTCACTAACAACGCCATTTGTGTTTTATTCGTAACAAGAAGTTTGTTGTCGAACTCTGAGGTTAAACTCGAACAAAGTTTTGAAATCTCCCCCGAATCCTGCGAGTGTTAGTACCACGCAGGTTTGGACTTCATCAGTTGTGTGAAGATTGAAGTGCATCGTTTCCACCCGCAGCATGTCTCTGACACTGGCTCAGGGTGAAGGCATTACTGTCATCACCGTCACCTCAAACCCGAAGAGCAAATGGCCCATTCTGTGTCAGATCCTGGGCACTTTATGCTACACTCCAGTATATTCTGTGTCTCAGGCTGTGAAGGAGAAGCTGAAGAGCGTTTACACTGCTCTTGGGACTATGCAGATAATATATGGAGTCCTCTGCATTGTGTTGGGGGTTCTGATTGACAGACTTTGGTATTGGAACAACCTTACTGGTTGTGATGCTGTTTTTTGGTTCGGTGGTACGGCCATTGTATTTGGAATCGTGACTATTCTTACAGCTTGGTTTCCCAGTTCTTGTCTGCTGGCCTTCACACTGCTTCTGAATGTAGTCAGTGGTGCGCTGGCCATCACAACTGTAGTCATGTGTTCAATAGACCTGGTCAGTGGAAATTATCTATACTGCAATGATTATTATGATTCTTCAACACCTTCCCCTGAACAGAGGAGTGATAGAGAGACCTGCATGAAATACATGGAGACCAATCAGATGATCACTGGAGGTCTGGATATCATGATAATGGTGTTGTCGGTGCTTCAGCTCTGTGTGACCATTAGTTTCTGTGTTCTGACTGGGaaagttttgtgcacgaaaaCAGAGGATGCAGAGATGGTGAAGGATCCAGAACTTAACAAGCCGCTGCTGGAGGATGCCATTGCTGCAAATTAGACAGAGAACACACAAAACAACACGTATATGCAGTATATACAGCCGCACTCAGTATAACAGTGAGATGTTTTACAGCTTTATACAGTACATGTTTTATACCAGGCGTTTAGGTAACTTCTTAAAATAAGAGCCTGCAATTCAAAGTAAATGCCTTGAGCACTTTAGCATcaccttttttatatattttttgcacttATGGTATTTTGACTTCAAAGCTGACCAAGATGGAGTGAATTTTCTCCTTAATCTGACATTTTGGAAATCTGCTGATATCCACTATTCAGTTTATAAATACTAAGCCTtaccaaacatttttaacaaatttacaaCATGACTGAATTTAGATCAAATACCAGATGAATCATTTTGCTGCGTATTTGCACAATTTCACCACCAGGCGGTGCTGAGAAATTGTCAGTTAAATCATTTGCCTTTCAGAGATGAAAAAAACCCTATTTGACAACATAAAAGATATTTGTATTACTTTCTATAACGGTTTCGTGTTTTACGGTTTTGTTACTAGGTGTTAATGTAAGCATTTATTAATGGCTGGGCTTGCATTATACTTTTTGCTGCCACATTTAACGAAATATGCTAAAAAAAAGAGAGTTCTTGTAAGTGATCTCATAAGCACCTTATTCTATAAAGGGccacaaaataaaatacactttttgaa
>TCONS_00021538
GCCTTATAACGGGAAATGATGCCTTCCGGACCAAAGTCGGGAAGTTGCAGGTTTGGACTTCATCAGTTGTGTGAAGATTGAAGTGCATCGTTTCCACCCGCAGCATGTCTCTGACACTGGCTCAGGGTGAAGGCATTACTGTCATCACCGTCACCTCAAACCCGAAGAGCAAATGGCCCATTCTGTGTCAGATCCTGGGCACTTTATGCTACACTCCAGTATATTCTGTGTCTCAGGCTGTGAAGGAGAAGCTGAAGAGCGTTTACACTGCTCTTGGGACTATGCAGATAATATATGGAGTCCTCTGCATTGTGTTGGGGGTTCTGATTGACAGACTTTGGTATTGGAACAACCTTACTGGTTGTGATGCTGTTTTTTGGTTCGGTGGTACGGCCATTGTATTTGGAATCGTGACTATTCTTACAGCTTGGTTTCCCAGTTCTTGTCTGCTGGCCTTCACACTGCTTCTGAATGTAGTCAGTGGTGCGCTGGCCATCACAACTGTAGTCATGTGTTCAATAGACCTGGTCAGTGGAAATTATCTATACTGCAATGATTATTATGATTCTTCAACACCTTCCCCTGAACAGAGGAGTGATAGAGAGACCTGCATGAAATACATGGAGACCAATCAGATGATCACTGGAGGTCTGGATATCATGATAATGGTGTTGTCGGTGCTTCAGCTCTGTGTGACCATTAGTTTCTGTGTTCTGACTGGGaaagttttgtgcacgaaaaCAGAGGATGCAGAGATGGTGAAGGATCCAGAACTTAACAAGCCGCTGCTGGAGGATGCCATTGCTGCAAATTAGACAGAGAACACACAAAACAACACGTATATGCAGTATATACAGCCGCACTCAGTATAACAGTGAGATGTTTTACAGCTTTATACAGTACATGTTTTATACCAGGCGTTTAGGTAACTTCTT
>TCONS_00021539
ATTCGTTCACTAACAACGCCATTTGTGTTTTATTCGTAACAAGAAGTTTGTTGTCGAACTCTGAGGTTAAACTCGAACAAAGTTTTGAAATCTCCCCCGAATCCTGCGAGTGTTAGTACCACGGTTTGGACTTCATCAGTTGTGTGAAGATTGAAGTGCATCGTTTCCACCCGCAGCATGTCTCTGACACTGGCTCAGGGTGAAGGCATTACTGTCATCACCGTCACCTCAAACCCGAAGAGCAAATGGCCCATTCTGTGTCAGATCCTGGGCACTTTATGCTACACTCCAGTATATTCTGTGTCTCAGGCTGTGAAGGAGAAGCTGAAGAGCGTTTACACTGCTCTTGGGACTATGCAGATAATATATGGAGTCCTCTGCATTGTGTTGGGGGTTCTGATTGACAGACTTTGGTATTGGAACAACCTTACTGGTTGTGATGCTGTTTTTTGGTTCGGTGGTACGGCCATTGTATTTGGAATCGTGACTATTCTTACAGCTTGGTTTCCCAGTTCTTGTCTGCTGGCCTTCACACTGCTTCTGAATGTAGTCAGTGGTGCGCTGGCCATCACAACTGTAGTCATGTGTTCAATAGACCTGGTCAGTGGAAATTATCTATACTGCAATGATTATTATGATTCTTCAACACCTTCCCCTGAACAGAGGAGTGATAGAGAGACCTGCATGAAATACATGGAGACCAATCAGATGATCACTGGAGGTCTGGATATCATGATAATGGTGTTGTCGGTGCTTCAGCTCTGTGTGACCATTAGTTTCTGTGTTCTGACTGGGaaagttttgtgcacgaaaaCAGAGGATGCAGAGATGGTGAAGGATCCAGAACTTAACAAGCCGCTGCTGGAGGATGCCATTGCTGCAAATTAGACAGAGAACACACAAAACAACACGTATATG
>TCONS_00021540
CAGGTTTGGACTTCATCAGTTGTGTGAAGATTGAAGTGCATCGTTTCCACCCGCAGCATGTCTCTGACACTGGCTCAGGGTGAAGGCATTACTGTCATCACCGTCACCTCAAACCCGAAGAGCAAATGGCCCATTCTGTGTCAGATCCTGGGCACTTTATGCTACACTCCAGTATATTCTGTGTCTCAGGCTGTGAAGGAGAAGCTGAAGAGCGTTTACACTGCTCTTGGGACTATGCAGATAATATATGGAGTCCTCTGCATTGTGTTGGGGGTTCTGATTGACAGACTTTGGTATTGGAACAACCTTACTGGTTGTGATGCTGTTTTTTGGTTCGGTGGTACGGCCATTGTATTTGGAATCGTGACTATTCTTACAGCTTGGTTTCCCAGTTCTTGTCTGGTAAGTTTCTGTCAAAACCATAAAGTATCAAAAAAATCTGTTCTGGAATTATTTGAAGCATCACCAATTTATGTTGCTTGTGTTTTACAGCTGGCCTTCACACTGCTTCTGAATGTAGTCAGTGGTGCGCTGGCCATCACAACTGTAGTCATGTGTTCAATAGACCTGGTCAGTGGAAATTATCTATACTGCAATGATTATTATGATTCTTCAACACCTTCCCCTGAACAGAGGAGTGATAGAGAGACCTGCATGAAATACATGGAGACCAATCAGGTTctgattaaatttgttttatttataa
>TCONS_00021541
CAGGTTTGGACTTCATCAGTTGTGTGAAGATTGAAGTGCATCGTTTCCACCCGCAGCATGTCTCTGACACTGGCTCAGGGTGAAGGCATTACTGTCATCACCGTCACCTCAAACCCGAAGAGCAAATGGCCCATTCTGTGTCAGATCCTGGGCACTTTATGCTACACTCCAGTATATTCTGTGTCTCAGGCTGTGAAGGAGAAGCTGAAGAGCGTTTACACTGCTCTTGGGACTATGCAGATAATATATGGAGTCCTCTGCATTGTGTTGGGGGTTCTGATTGACAGACTTTGGTATTGGAACAACCTTACTGGTTGTGATGCTGTTTTTTGGTTCGGTGGTACGGTAAGAATTAATGTCTTATTCTTCTCCTTTTAAATATTTGATGTAGAGGTGTAAACCTACACTTAGGGTTGTGCCTATCAACGATAGTATCGTGTATCGACGATAGGCAAAGATATCGCCAAGAGCTGAAACCTATGACGATTTTAAAGAcgatgcttgcacacagttattttttgttcaccattttttctttcattggCATTCTACTTACCAGCAAAACCGAAATGTGCTCACactgcagatttgaaagacgaTGGCGCTTCCTCATACTGTTACCTCAGCCTCACTT
>TCONS_00022264
cttttttgtttaaaagaacCGGTTCACAAATTCAATTCACTGATTTCATTGCGTCATCGCGTAAATTCGGTTATTTACAACCCTAAAAGTAGTTTCTATTTACTTTAAACAGTGCAGTAATGTATTTAAATCTGTGTTTTAAAGAAAGCCTTTATTAGGTGGTCGGCTGTCTGAATGAAACGCTGTGATGCAGTCTGTGACGATGCAGTTTGTGAACTGATTCAGAAGATCTGTTTAAAGTAACCGACTCAACAGAACGATTCGTTCACTAACAACGCCATTTGTGTTTTATTCGTAACAAGAAGTTTGTTGTCGAACTCTGAGGTTAAACTCGAACAAAGTTTTGAAATCTCCCCCGAATCCTGCGAGTGTTAGTACCACGgtataaTCTCAGGTATTGGAATCGTCATCGGGAACGGAAAAGGTTATCAAAACATCCCTATGTCCCTTTATGTCATTGTTTaagcaaacttttatttattttttaaactgagCAGAAAAACATGGTCAATAAAGGATTGAGGTaacgttggttttatattcgcctatttagactttctccttaaaaatataatttcacaaattatttctttgcaAATTCCAAATAGCGGAATCaaaattagcagccaatgactattaaagtacaacattgttc

Function

symbol description
tmem176l.1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM176B (transmembrane protein 176B).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080829-11 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM176B (transmembrane protein 176B).

Ensembl:

ensembl_id ENSDARG00000099491

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021537 False 1860 mRNA 0.40 7 46518114 46525135
TCONS_00021538 False 935 mRNA 0.45 7 46518670 46525155
TCONS_00021539 False 918 mRNA 0.45 7 46518760 46524842
TCONS_00021540 False 706 lncRNA 0.43 3 46519823 46521667
TCONS_00021541 False 634 lncRNA 0.44 2 46520920 46521667
TCONS_00022264 True 655 lncRNA 0.35 2 46523564 46525101

Neighbor

gene id symbol gene type direction distance location
XLOC_011033 NA coding downstream 58264 46396002 ~ 46459850 (-)
XLOC_011032 NA coding downstream 124829 46350228 ~ 46393285 (-)
XLOC_011031 CU469499.1 coding downstream 177457 46340543 ~ 46340657 (-)
XLOC_011030 BX537142.1 coding downstream 301205 46216808 ~ 46216909 (-)
XLOC_011029 NA coding downstream 314769 46196125 ~ 46203345 (-)
XLOC_011035 si:dkey-152b24.7 coding upstream 5089 46530244 ~ 46567344 (-)
XLOC_011036 si:dkey-152b24.8 coding upstream 28825 46553980 ~ 46558708 (-)
XLOC_011037 zgc:174938 coding upstream 42253 46567408 ~ 46573211 (-)
XLOC_011038 si:dkey-152b24.6 coding upstream 51547 46576702 ~ 46579981 (-)
XLOC_011039 BX323793.1 coding upstream 58449 46583604 ~ 46587938 (-)
XLOC_010626 CR392024.2 misc downstream 25622939 20895112 ~ 20895175 (-)
XLOC_011041 NA non-coding upstream 96048 46621203 ~ 46622443 (-)
XLOC_011045 NA non-coding upstream 271257 46796412 ~ 46798742 (-)
XLOC_011046 NA non-coding upstream 281082 46806237 ~ 46810212 (-)
XLOC_011049 NA non-coding upstream 777291 47302446 ~ 47304669 (-)
XLOC_011054 CR388140.2 non-coding upstream 1417988 47943143 ~ 47943257 (-)

Expression


Co-expression Network