RNA id: TCONS_00023398


Basic Information

Item Value
RNA id TCONS_00023398
length 3702
RNA type mRNA
GC content 0.43
exon number 10
gene id XLOC_011830
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 1998041 ~ 2039511 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTGGCCTCATTTTATAAGTGATTTGAGTGGTGTTTATATTGGCTTGGAGGATGACTCTGGCTCAACTCAGGTTATTCGGCACGGCAGTGTTTCTGCTCCTATTTCTCCATCAATCTCCGTCTGCGGCTCAAGAAGAAGAGAAACTCTGCAAGGATAAATTCAGTGTTGGCAAAGAGGATTTTGTGTTGAATACAGATGAATCGGTGAAGGAAGGAGCCACGTTTTTAGGCTCTCCTCAAGTCTCTAAACCTGAAGACTGTGTTATGGCCTGCTGTAATGATCCTAACTGCAATCTGGCACTGATGGAGCACAGAGAAGATCCTAAAAGCATCAACACCTGCTTCATTATAAACTGTCTGTACAAGCAGAAGAAGGTCTGCCATTTTGTGAGGAAAAAGGGCTTTACTAACTACCTGCGCAAATCTGTTTTCAGCGATTACCTCGAGCAGAAAGCCACAGATGTAGAGGATAGACCTCCGCGTGCAAGGGCCGGACAGGACAGAGTTGTTCAACCTAATGAAGATGTGACGCTCAATGGCATCGAGAGCTCGGATGATAAAAAGATTGTGAAATACGAATGGGAGCAAGTGGTCGGAGACCCGTCTGCTGTAATGACGAAAGGGCATTTTGCGGACTCTGTGACAGTCTCCAATCTTTCTCCGGGGATGTATAAGTTCAGACTGACAGTTTCAGATGAAGCTGGACAGACGGGATCCGCAGAGGTGTCCATTTTGGTTCTGACTCGAGAACAGTCGCTCCATCACTGTCTGGTGCCGAAGAAGGAGGGTCCATGCCGAGGCTCTTTCCCACGCTGGCATTATAACGCCGCCACAGAGAAATGCGAAGAGTTCAAGTTTGGAGGCTGCGTGCCAAACCGTAATAACTATCTGGCGCTCAACGAATGCCAGAGCGCCTGCAACAAAGTCTCAGTTTCTAATATTGGTTCTCCTGCTCCTCATCCATCTGGAAGAATAGGTCCCATTGACGCTGttgagcaGTGTGACAGGCCCTGCAGTCCTGAGCATTTCACATGTGATAATAAATGCTGCATCGGGAAAGATCTGGTGTGCGACAAAGAGAAACAATGCAGCGACGGCTCAGATGAAAAGGAATGCGACAAATGGGATTATGATCTTATTAAATTGCGGGGAATCTCTCCGGACGTGTCGAAAGCTCGCTGTGTGAAGCCGCCAGTAACAGGAACCTGTCCCGGCAGTCAAACCAAATGGTATTACAATCCAAACAAGCGTCTCTGTTACCGCTTTAACTACGGCGGCTGTGAAGGAAATCAAAACCGCTTTGAAACTGAGGCCGGCTGCATGACGTTCTGCAGCGGAGTCACCGAAAATGATAAGTTTCCCGAGGAAAGTCAGTTCGATAAGCAGGAAGGCAAGAGCAACAACACAGTTGCTATTGTGATGGTAATCATCTTGGCCTTCGCTATCGCCATCCTGCTGGTCATCATCGCCTACTGCCTGGTCAAAGGCCGAAAGAAGAGTCGGAATAAACACCAGCAGCTGGCGGTAAACGGCGGACACATTTACAGATACGAGGACTCAGAGAAACTCGTCTACAACAGCACAACCAAACCCATCTGAACCCCCAACCTGTGAAACGATACACCTGTATCTGCAGTAATTATCTGAGCTGTTTCCAGTAGACTGTGCAGCATTTACTCCCAGCTTGCTTTGTTTTAAGTTTGTATCACCAGCAGCTTTTCTTAGGAATGCTGTGAatgtttgttttaagtttttattgcTATGAATATGATTTACTGATTTATATTTTAGGTTTGTTGGATTTTGCTCAGgggtaaatgtgtttttattttccacCATGTTACCATAAAACATTAAATCACTATTCTTGAgccatttagttttatttttggattGTTTTGGTCTGTCAGAGATGCTGCCTGTCTTCAGTTAATCTTTAAGCCATGTAAACTTTACTTTACTACTTAGAAATTAGTATTTTAGTATGTCTAAGACCTGAGATATCAATCtatggtttgttttttttatgttttttttatgtatatgtatttttagtatatttttttGGATGTGGAAATGACAATCATGGTGATAAATACATATTCCAAAACGCAAATTtgtacatagattttttttttttaaatatgtatctAAAACTTTCCCTGATGTCTAAACTACTAATCTTCAAAAGTCTCAATAAAAGTAACATGTACagactctgtgtgtgttttttgaaattgttatatatacacactcaccggccactttattaggtacaccttactagtaccaggttggacccacttttagattaagaactgccttaatcaacaagctactggaaatattcctcagagattttgctccatattgacatgatagcatcacacagttgctgcagatttgtcggctgcacatgcatgatgccaatctcccgttccaccacatcccaaagctgctctattggattgagctctggtgactgtggaggccatttgagtacagtgaactcatcgtcatgttcaagaaagcagtctgagatgattctcgctttatgacatgctgcgttatcctgctggaagtagccatcagaagatggagacactgtgctcataaagggatggacatggtcagcagcaatactcaggtaggctgtggcgttgatgctcaattggtactaatggacccaaagaaaatctcccccacaccattacaccaccaccaccagcctgaaccgctgatacaaggcaggatgatccatgctttcatgttgttgaggccaaattgtgagccgagcatctgaatgtgtcagcagaaatggagactcatcagagcagcaacgtttctccaatcttctattgtccagttttggtgagtctgtgtgaattgtagcctcagtttcctgttcttagctgacaggagcggcacccggtgtggtcttctgctgctgtagcccatctgcctcaaggttggacgtgttgtgtgttcagagatgctcttctgcagagctcggttgtaacgagtgcttatttgagttactgttgcctttctatcagctggaaccagtctggccattctcctctgacctctggcatcaacaaggcatttgtgcccacagaactgccgctcactggatatttcctctttgtcggaccattctctgtaaaccctagagatggttgtgcgtgaaaatcccagtagatcagcagtttataaaataccagcccatctgacaccaacaatcatgccacgttcaaagtcccttaaatcccctttcttccccattctgatgctcgctttgaactgcagcagatcgtcttgaccatgtctacatgcataaatgcattaagttggtgccatgtgattggctgattggaaatttgacgagcagttggacaggtgtacctaataaagtgaccggtgagtgtattacGAACAGGtcgttgtatttaaaaaaaaaaacctgcaggtggcgctatgaactTTACACAAAACAATCGTTTTTCCAGCGTTAATTATACAGCTTTAATACGTTTAACAGCCACTATATAGACATATTTGGTTAAATTAAACTTTCCTTTACAACACAACGGACAAACACAAACTACAAACCTTGTTTTTCCTAGTTTTGAGGCAAACAACGATTCCTTTTTCGTTAACTAAGAGATTTAGTGTTAATTACACGACACACATAAACCCTA

Function

GO:

id name namespace
GO:0060429 epithelium development biological_process
GO:0030199 collagen fibril organization biological_process
GO:0008544 epidermis development biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2169 Enables peptidase inhibitor activity. Acts upstream of or within several processes, including collagen fibril organization; epidermis development; and neutrophil chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including apical ectodermal ridge; digestive system; fin fold pectoral fin bud; periderm; and sensory system. Used to study psoriasis. Orthologous to human SPINT1 (serine peptidase inhibitor, Kunitz type 1).

Ensembl:

ensembl_id ENSDART00000188838

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023395 lncRNA downstream 73150 1915788 ~ 1924891 (-) True XLOC_011829
TCONS_00024516 lncRNA downstream 117496 1875660 ~ 1880545 (-) False XLOC_011828
TCONS_00024518 lncRNA downstream 118661 1877638 ~ 1879380 (-) True XLOC_011828
TCONS_00024517 lncRNA downstream 119550 1877638 ~ 1878491 (-) False XLOC_011828
TCONS_00024515 lncRNA downstream 123818 1857693 ~ 1874223 (-) True XLOC_011827
TCONS_00023403 lncRNA upstream 364408 2401258 ~ 2422029 (-) True XLOC_011834
TCONS_00024809 lncRNA upstream 394049 2430899 ~ 2436278 (-) True XLOC_011835
TCONS_00024519 lncRNA upstream 984096 3020946 ~ 3051096 (-) True XLOC_011844
TCONS_00024520 lncRNA upstream 1786259 3823109 ~ 3829826 (-) True XLOC_011848
TCONS_00024521 lncRNA upstream 1867830 3904680 ~ 3912731 (-) False XLOC_011849
TCONS_00023394 mRNA downstream 293028 1704442 ~ 1705013 (-) True XLOC_011826
TCONS_00023393 mRNA downstream 294782 1664632 ~ 1703259 (-) True XLOC_011825
TCONS_00023392 mRNA downstream 590316 1393122 ~ 1407725 (-) True XLOC_011824
TCONS_00023391 mRNA downstream 590448 1393122 ~ 1407593 (-) False XLOC_011824
TCONS_00023390 mRNA downstream 823081 1074503 ~ 1174960 (-) True XLOC_011823
TCONS_00023400 mRNA upstream 72134 2108984 ~ 2126517 (-) True XLOC_011831
TCONS_00023402 mRNA upstream 311690 2348540 ~ 2386569 (-) True XLOC_011833
TCONS_00023404 mRNA upstream 442453 2479303 ~ 2535682 (-) True XLOC_011836
TCONS_00023405 mRNA upstream 532671 2569521 ~ 2595736 (-) False XLOC_011837
TCONS_00023406 mRNA upstream 532672 2569522 ~ 2573021 (-) False XLOC_011837
TCONS_00023378 other downstream 1792731 205194 ~ 205310 (-) True XLOC_011808
TCONS_00023401 other upstream 128806 2165656 ~ 2165770 (-) True XLOC_011832
TCONS_00023424 other upstream 1254490 3291340 ~ 3291456 (-) True XLOC_011846
TCONS_00023441 other upstream 3206490 5243340 ~ 5296561 (-) True XLOC_011855
TCONS_00023445 other upstream 3634068 5670918 ~ 5731699 (-) True XLOC_011860
TCONS_00023449 other upstream 3926125 5962975 ~ 5963065 (-) True XLOC_011866

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU82494 True 891 lncRNA 0.45 3 NC_047598.1 23396664 ~ 23397963 (-)