RNA id: TCONS_00023707


Basic Information

Item Value
RNA id TCONS_00023707
length 2531
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_012003
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 15756828 ~ 15777350 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTCACCAGACAGCCCTGCACCGGGCAGCTGTTGTGGGAAACCGTGACGCCGTTTCTGCCCTCATCCATGGAGGATGTGCTCTTGATCTACAAGACAAGGAAGGAAACACGGCTTTGCATGAAGTGTCATGGCACGGTTTCAGTGCTTGTGTGAAACTACTGGTCAAAGCTGGAGCAGATGTGAATCTAAAGAACAAAGTTGGAAACTCTCCTCTACATCTAGCGTGTCAGAACGGACATTCTCAGACCGCTCAACTAAAGCTCCTCTTTCCTTCCAGGCAGGTGAAACATGTTTACACTTTGCTGCTCGCTACAATCACTTGGCCATAATTAAGATGCTCTTGGGTTCTTTCTGCTCTGTGACAGAGAAAAACCAGACAGGAGACACTGCGCTCCATGTCGCTGCTGCCCTGAATCACAAGAAAGCGGTCAGTCTGTTGCTGGAAGCAGGAGCTGATGCAAATATCAAAAACAATACCGGACAAACTGCTCTTGATAAAGCTCGAGACAATAACAACCGAGAGCTGGCTATTCTTCTAGCTAAATCCAATCAGGTGCAGAGGTATGCTCGAGGAAAGACAGTGCGAAAAAGACGAGATGTGTCTCGGGCCCAGAGGAAAACTCAATCCCTCCCCAGAGTCCACAAACCCAGAAAGAAGGATGACAGTGAAGCGGCTGAAGACTCAATCAACAGTGATCAAGCCTTTCAGCGGATCCAGCCTGAACACAGAGCTGCGACTCTGAGCCCTGACAACAGGAGGAAAAACACCAGTCCAGGCAGGACGCCTGTGCTGCTGAGAGAGTATGATCTGTATGAGAGAGGAGTGAAGCCCAGCAGCCTCAGCTCTCCAGACCAGCATCAAACTCCAGCGAAAGCCTTTCAGCTGTACACGCTCTACAGAGACACGGACGGACAGATCAAGCAGGCTCCTGCAAAAGACTGTCACTGTAAACCCATCATTAAAGCGCTGGAGAAAAAGCTGAAAGCCACAGAGATGGAAATGAGGACGGAAATACACACCATTCAAGAGGAGATCAACTGCAGACTCGGACGAATAGAGCAGAAAAATAAGCATCAGATTAAAGTGCTTGAGAAACTGACGCAGGAGCGAGTCTCGGCAGAGCGGATGGAGTGTCACTATCGCATCAACCAGAGAGCAACACTGGAGCGCATGGAGGGCCAAAGAAAGCAGCAGGCTGCGGCCAGCAATGCAGTGAAGAGCTGGTGCATGTCTAAGATTGAGGATCTGGAGGTGCGGATGCCTGAGACGCAGTACTACAAGCTCCTGCGCTCTCCATCCGCAGACTCAGAGCTGGAGGGTCTGCCGCTGCTGTCACTTGTCTCAGAAGAAAGCTCCAGTTCACTGGCCACATACGTCAATGTGCTGCCTACACCTGGAGCCTCTCACAAGAGCCTGGAGTTCGAGGACACGCTGGGAAAACGATACTTGAAGATCAAGCAGAATGGCTCTTCAGATGATTATCATAACATAACTGCTCAACCTATGGTGAAGCACAAGCCTCTGTCTCGGTCGCTGGCGACTGCTGACCTCCAGTGGCAGCGTTCAGAACTACAGGAGGCTGAAATCTCCAAGCACAGGTCAGACAAAGGTCATGAACTCTGTGACAGCAGCACCAGCAGCAGCCGCTCCACATCCAGCAAAACCTTCAATGACAGCGACAGCATTTCCAGATCGGCTTGGAAACACAGCAAACACCTCAAAGACAGGATTAAAGCCCACCGCGCACAAACCCAGCAGAGCACCACCGTCAACACCTTAGAAGTGTTTTCCCAGCGGCCCGCAGAGGCCACGTTTACTCAAGAGAGGGCAAACCTGCATGCTGTGGAGGTGACGCAGCGCTTCTTCGAGACGGTGTCCACGCAGCTGGAGCGCTGGTATGAGAGGAAGATCCTGGAGACACAGAGATCCGCAGAACATAAAGCTCTGCAGGACAGAAGCAGACTGATGGAGAAGATCAGCTCGCTGGAGGAAGAGCTCAGGAGGCTTCGCACTGatcacagtacaaacacatgaaaaacataaaaagatgTCATGCTTTCAtccatttttagacaacacaataccaacTAGTAATGTATTTTGGGAAATGTTCCTTCCAGCCTAATGCATTTAAGCATCTCTTTTTTATctctatttaataaaaataaaaaactaataatatcaaaattcttaaaatatattttacatttattttcttaaatatttaagtaataatagtaattccCCATATTAGTCTGGATAAGAGAATTTTTATGAAAGTACTTCTtacaaatgcatatatatatatatatatatatatatatatatatatatataatatatatataatttatatatatttttatatatctatttatttaaaatatatttttatatatattatttatttctgagCTATTCCATTACATACATAAATTACAACTTAAAATAATGTAAGCATATCGTGAGTAATGTAAGCTATCATCTTTATGCTGATGATGCACAGCTTTATATGCCCATAAAAATTGG

Function

GO:

id name namespace
GO:0002043 blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-120525-1 Predicted to be involved in blood vessel endothelial cell proliferation involved in sprouting angiogenesis and branching involved in blood vessel morphogenesis. Orthologous to human ANKRD6 (ankyrin repeat domain 6).

Ensembl:

ensembl_id ENSDART00000155711

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024867 lncRNA downstream 12832 15741501 ~ 15743996 (-) True XLOC_012001
TCONS_00023691 lncRNA downstream 327990 15421893 ~ 15428838 (-) True XLOC_011993
TCONS_00024866 lncRNA downstream 328000 15415718 ~ 15428828 (-) False XLOC_011993
TCONS_00024865 lncRNA downstream 451905 15302837 ~ 15304923 (-) True XLOC_011991
TCONS_00023688 lncRNA downstream 527070 15223224 ~ 15229758 (-) True XLOC_011989
TCONS_00024868 lncRNA upstream 300485 16077835 ~ 16080244 (-) False XLOC_012006
TCONS_00024869 lncRNA upstream 300485 16077835 ~ 16087935 (-) True XLOC_012006
TCONS_00024870 lncRNA upstream 415129 16192479 ~ 16193620 (-) True XLOC_012008
TCONS_00024871 lncRNA upstream 787528 16564878 ~ 16566671 (-) False XLOC_012012
TCONS_00024872 lncRNA upstream 787528 16564878 ~ 16568991 (-) True XLOC_012012
TCONS_00023705 mRNA downstream 9532 15744090 ~ 15747296 (-) False XLOC_012002
TCONS_00023706 mRNA downstream 9930 15745386 ~ 15746898 (-) True XLOC_012002
TCONS_00023704 mRNA downstream 89543 15659180 ~ 15667285 (-) True XLOC_012000
TCONS_00023702 mRNA downstream 89620 15658867 ~ 15667208 (-) False XLOC_012000
TCONS_00023703 mRNA downstream 89630 15659180 ~ 15667198 (-) False XLOC_012000
TCONS_00023709 mRNA upstream 274098 16051448 ~ 16069905 (-) True XLOC_012005
TCONS_00023710 mRNA upstream 332935 16110285 ~ 16133249 (-) True XLOC_012007
TCONS_00023711 mRNA upstream 520772 16298122 ~ 16324565 (-) True XLOC_012009
TCONS_00023712 mRNA upstream 558928 16336278 ~ 16342388 (-) True XLOC_012010
TCONS_00023713 mRNA upstream 571480 16348830 ~ 16422654 (-) True XLOC_012011
TCONS_00023693 other downstream 276580 15477466 ~ 15480248 (-) False XLOC_011994
TCONS_00023684 other downstream 567443 15150025 ~ 15189385 (-) False XLOC_011987
TCONS_00023679 other downstream 625391 15121977 ~ 15131437 (-) False XLOC_011987
TCONS_00023673 other downstream 820406 14919210 ~ 14936422 (-) True XLOC_011983
TCONS_00023657 other downstream 1051780 14694275 ~ 14705048 (-) False XLOC_011978
TCONS_00023708 other upstream 104716 15882066 ~ 15899463 (-) True XLOC_012004
TCONS_00023714 other upstream 1074922 16852272 ~ 16852405 (-) True XLOC_012014
TCONS_00023716 other upstream 1129173 16906523 ~ 16965809 (-) False XLOC_012015
TCONS_00023722 other upstream 1667025 17444375 ~ 17447902 (-) True XLOC_012016
TCONS_00023727 other upstream 2001618 17778968 ~ 17779083 (-) True XLOC_012019

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000032_00716503_00725057.mRNA True 2473 mRNA 0.48 13 CI01000032 716503 ~ 725436 (+)