RNA id: TCONS_00023702


Basic Information

Item Value
RNA id TCONS_00023702
length 3274
RNA type mRNA
GC content 0.35
exon number 3
gene id XLOC_012000
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 15658867 ~ 15667285 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATTAAAGTGTCAGATAAATTCTGTACATAAGAGGAGACGCTAGCTGTCTGTCAACTTAGctaTCCAGCGGTTACCTAAAGATGATCACATCTGTTCCATCTCCTGAAGATCTTGGCTGGAATGGACTGTAACCGTCCACCAGAGTAATGGCACGGTTTCGGCGGAAATCATGTTGTGCAGTCATCGTTTTAGCCTTAGCTGTGTTCATTATAACAGTCATCCTTAAGTCTCTAAGCCCTGAAGATAACATTTCCGGCAGCCATTTTGCAGTAAAACTTATTCCCTTTCCAAAAGAAAACACCAACCTCATTTTATCCCCCAAACCCGTGCTGATGATACCATTAGAAAAGCCTGAGAAAATGGAGAATGAATTGCAAGATTTCCCTGAACCAAATTACAATGTGCACGCTTTCTACTACGTCTGGTATGGAAGCCCTCAGTTTGATGGAAAGTACGTCCACTGGGATCATCCACTTTTACCACATTGGGACCCCAAAGTGGCCTCAAGTTATTCAACGGGACGACACCAACCTCCTGAGGACATCGGGGCAAATTTCTACCCTGCGTTGGGTCCGTACAGCTCCAGAGATCCAGCGGTTTTAGAGGAACACATGAGACAGCTGAGAATGGCTGCTGTTGGTGTTCTAGCAGTTTCGTGGTATCCACGTAGTATGAAGGATGACAATGGAGAAGAAATTGATAGCTTGCTGCCTTTGATTTTGGATGCAGCTGACAAAAATCAGTTGAAGGTGTTGTacaatttatatgtttttaaaaatgtaatatgtataaataaatatgtttaaattgaATATGTATGAATGGAATTAGTATGGCTGTGTTGTTTTAGTTAACTAATACTCAAATCTTTTTAAAGGTTATTTTAACtataaaaataagctaaaataaaaataatattgaaaaattaACTTTATCTGAATTATAATGCAATTCATAGAAATATAACttgaattttatatttttaaatattttataaactttGTCAGCTAGCTGACAAGGAAATTGTAAATTAGTCcatattttaattagatttaccttaaaatatagctaaaactaaaactaaatttatTTCTTGTTACTtaagttaactgaaataaaatagaatatataCAATTGTTTAGTTTTATATTAACTTCTTGCAATATAAATATCTCATTATAATTTAGTTTACcctcatttattaaaataataaagcagTAAATTatttgggcgacacggtggctcagtggttagcactgtcatctcacagcaggaagatagctggttttagcctcggctgggtcagttggcatttctgtttggagtttgcatgttctccgtgttcacgtgggtttcttccgggtgctccggtttctcccacagtccaaagacatgcggtacaggtgcattgaataagctaaactggccatagtgtactctatgtgtgtgaatgagtgtctatggttGTCTTTccttactgggttgcagctggaaggggatccggtgcgtaaaacatatgctggatcagttggcagtttattccacagtggcaacccctgatgaataaagagactaagctgaaaagaaaataaataaataaaactagaacatataaaaattaatttagtttaacttgatttattcaaatgttaaaacaataaattattttcaaaattattaatttatttattaagaaaactATTTAAAGATCCTTCAATAATACAGAACTACTTAAACTTTGATTACAAAATTTTAAGAtaccaaattaaaatataatacagtaataaaatgtaatttttttttcctcaacattttataaataacaatTTTCCCATTTCTTTTGTAATTGTTTATACAACAACTTTTTTTCTGTGTCATTATTTGGTTGAAATTCATAGGTGTTTTGGTGTCCTATATAAACTATTTGTTCCTCCATGACAGGTTGTGTTTCATATTGAACCATACAAAGGACGAGACGATGCAAATATGCGTGAAAATATTCAGTATATTGTGGATCGGTATGTTTAATCCATTTTATTAAGCTCTCACTATTTATCTACTTCATACAAgtgtacaaatacaaataatactcAGATTTGTAATGTTAGACAAGCCTGTTCAAGATCAAGAATAAAATACTTTGCCTATAATTTTCTAAATAtactaataaatcattaacaaactcttgtttttttatttataatttaggaAATTAATCTCTAATTATTCTCTAGCTAATCTAAATCATCTGTAGCTACTTTAACAGAAACACATGATcaatacacattttatttaatatcccTTATTCTCTTTTTATACTAGCTATGGAAACCATCCTGCtttttataaatacaaaacaagCACAGGCAAACTTCTTCCTCTCTACTACATATACGACTCCTACTTACAGACTCCTGATGTTTGGGCACAACTGCTAAAGCCGAACGGCATATCGACCGTCAGAAACACACCATATGACGGCATCTTCATCGCCCTTCTTGTGGAAGAAAGACACAAGAAGGACATCCTGACTGCAGGATTTGATggactttacacttattttgcaACCAACGGCTTTACATACGGCTCTTCACATCATAACTGGAGAACCATCAAAACCTTCTGCGACTATAATGACTTGGTGTTTATTCCAAGCGTAGGGCCAGGTTATATCGATACTAGTATCCGGCCCTGGAATGCACAGAATACAAGAAACCGCATTAACGGAAAATATTATGAAACCGCTTTTAATGCTGCAGTGGATGCGAGACCACAGATCATCTCCATAACGTCATTCAATGAATGGCATGAAGGAACGCAGATTGAAAAGGCCATCCCTAAAACATGGGGTAAAACCGTGTATCTTGACTACCTGCCACATAAACCCACCGTTTACCTGGAGATAACGCAAAGGTGGGCTAGAAAGTTTAGCGACGAGCAGAAGAAGTGGCTGGAGTAGTTTTATTGGTCATCCTGGAAAAACAACTGTTGGGGCTTGTTTTAATCTGATTTATTGTAGGTTTTgggtgttttttgttttacttacaTGCCTTTTACTACTGTATATGACAATCTTACTTGAATGAACTTTTAAAACGCTATTAATGATGATATATTCTGGCTGGATGCTGTAAATATAACAAATCCTGCTTTATGCTAGGTGTTTTTAAGTATGCtataattaaaatatgtaaagtATGTTTACTTTTAAGCTGTGAGTCAATTTCCCAtcaagtttttttattaaataataaaaaaattgacattcAAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0004559 alpha-mannosidase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-87 Predicted to enable alpha-mannosidase activity. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human MANEA (mannosidase endo-alpha).

Ensembl:

ensembl_id ENSDART00000132571

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023691 lncRNA downstream 230029 15421893 ~ 15428838 (-) True XLOC_011993
TCONS_00024866 lncRNA downstream 230039 15415718 ~ 15428828 (-) False XLOC_011993
TCONS_00024865 lncRNA downstream 353944 15302837 ~ 15304923 (-) True XLOC_011991
TCONS_00023688 lncRNA downstream 429109 15223224 ~ 15229758 (-) True XLOC_011989
TCONS_00024861 lncRNA downstream 539349 15111493 ~ 15119518 (-) True XLOC_011986
TCONS_00024867 lncRNA upstream 74293 15741501 ~ 15743996 (-) True XLOC_012001
TCONS_00024868 lncRNA upstream 410627 16077835 ~ 16080244 (-) False XLOC_012006
TCONS_00024869 lncRNA upstream 410627 16077835 ~ 16087935 (-) True XLOC_012006
TCONS_00024870 lncRNA upstream 525271 16192479 ~ 16193620 (-) True XLOC_012008
TCONS_00024871 lncRNA upstream 897670 16564878 ~ 16566671 (-) False XLOC_012012
TCONS_00023700 mRNA downstream 1838 15631619 ~ 15657029 (-) False XLOC_011999
TCONS_00023701 mRNA downstream 18400 15639339 ~ 15640467 (-) True XLOC_011999
TCONS_00023699 mRNA downstream 47123 15605572 ~ 15611744 (-) True XLOC_011998
TCONS_00023697 mRNA downstream 58315 15580665 ~ 15600552 (-) False XLOC_011997
TCONS_00023698 mRNA downstream 58412 15581046 ~ 15600455 (-) True XLOC_011997
TCONS_00023705 mRNA upstream 76882 15744090 ~ 15747296 (-) False XLOC_012002
TCONS_00023706 mRNA upstream 78178 15745386 ~ 15746898 (-) True XLOC_012002
TCONS_00023707 mRNA upstream 89620 15756828 ~ 15777350 (-) True XLOC_012003
TCONS_00023709 mRNA upstream 384240 16051448 ~ 16069905 (-) True XLOC_012005
TCONS_00023710 mRNA upstream 443077 16110285 ~ 16133249 (-) True XLOC_012007
TCONS_00023693 other downstream 178619 15477466 ~ 15480248 (-) False XLOC_011994
TCONS_00023684 other downstream 469482 15150025 ~ 15189385 (-) False XLOC_011987
TCONS_00023679 other downstream 527430 15121977 ~ 15131437 (-) False XLOC_011987
TCONS_00023673 other downstream 722445 14919210 ~ 14936422 (-) True XLOC_011983
TCONS_00023657 other downstream 953819 14694275 ~ 14705048 (-) False XLOC_011978
TCONS_00023708 other upstream 214858 15882066 ~ 15899463 (-) True XLOC_012004
TCONS_00023714 other upstream 1185064 16852272 ~ 16852405 (-) True XLOC_012014
TCONS_00023716 other upstream 1239315 16906523 ~ 16965809 (-) False XLOC_012015
TCONS_00023722 other upstream 1777167 17444375 ~ 17447902 (-) True XLOC_012016
TCONS_00023727 other upstream 2111760 17778968 ~ 17779083 (-) True XLOC_012019

Expression Profile

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