Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025261 |
| length | 496 |
| RNA type | processed_transcript |
| GC content | 0.46 |
| exon number | 4 |
| gene id | XLOC_012623 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 9615147 ~ 9722291 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:1904071 | presynaptic active zone assembly | biological_process |
| GO:0035418 | protein localization to synapse | biological_process |
| GO:0007416 | synapse assembly | biological_process |
| GO:0030424 | axon | cellular_component |
| GO:0048786 | presynaptic active zone | cellular_component |
| GO:0048788 | cytoskeleton of presynaptic active zone | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0098978 | glutamatergic synapse | cellular_component |
| GO:0098982 | GABA-ergic synapse | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0098882 | structural constituent of presynaptic active zone | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-8100 | Predicted to be a structural constituent of presynaptic active zone. Predicted to be involved in presynaptic active zone assembly and protein localization to synapse. Predicted to act upstream of or within synapse assembly. Predicted to be located in cell projection; membrane; and presynaptic active zone. Predicted to be active in several cellular components, including GABA-ergic synapse; cytoskeleton of presynaptic active zone; and glutamatergic synapse. Is expressed in brain; cerebellum; hindbrain; and torus longitudinalis. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 3. Orthologous to human PCLO (piccolo presynaptic cytomatrix protein). |
| ensembl_id | ENSDART00000173169 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00025224 | lncRNA | upstream | 1370418 | 8334388 ~ 8338157 (+) | False | XLOC_012608 |
| TCONS_00025226 | lncRNA | upstream | 1370418 | 8335139 ~ 8338157 (+) | True | XLOC_012608 |
| TCONS_00025225 | lncRNA | upstream | 1373196 | 8334502 ~ 8335379 (+) | False | XLOC_012608 |
| TCONS_00025221 | lncRNA | upstream | 1605379 | 8100905 ~ 8103196 (+) | True | XLOC_012606 |
| TCONS_00027056 | lncRNA | upstream | 2044918 | 7651829 ~ 7663657 (+) | True | XLOC_012602 |
| TCONS_00025265 | lncRNA | downstream | 265110 | 9980878 ~ 9983912 (+) | True | XLOC_012626 |
| TCONS_00026870 | lncRNA | downstream | 369873 | 10085641 ~ 10089253 (+) | True | XLOC_012629 |
| TCONS_00027057 | lncRNA | downstream | 387173 | 10102941 ~ 10190202 (+) | False | XLOC_012630 |
| TCONS_00027058 | lncRNA | downstream | 390507 | 10106275 ~ 10151626 (+) | False | XLOC_012630 |
| TCONS_00025269 | lncRNA | downstream | 390507 | 10106275 ~ 10157525 (+) | False | XLOC_012630 |
| TCONS_00025255 | mRNA | upstream | 131797 | 9493720 ~ 9576778 (+) | True | XLOC_012621 |
| TCONS_00025252 | mRNA | upstream | 268653 | 9323211 ~ 9439922 (+) | False | XLOC_012620 |
| TCONS_00025253 | mRNA | upstream | 268653 | 9362455 ~ 9439922 (+) | False | XLOC_012620 |
| TCONS_00025254 | mRNA | upstream | 268653 | 9382847 ~ 9439922 (+) | True | XLOC_012620 |
| TCONS_00025250 | mRNA | upstream | 469900 | 9171778 ~ 9238675 (+) | True | XLOC_012618 |
| TCONS_00025262 | mRNA | downstream | 33607 | 9749375 ~ 9948604 (+) | False | XLOC_012624 |
| TCONS_00025263 | mRNA | downstream | 94874 | 9810642 ~ 9820299 (+) | True | XLOC_012624 |
| TCONS_00025266 | mRNA | downstream | 281045 | 9996813 ~ 10062630 (+) | True | XLOC_012627 |
| TCONS_00025272 | mRNA | downstream | 974004 | 10689772 ~ 10690365 (+) | True | XLOC_012634 |
| TCONS_00025274 | mRNA | downstream | 1068962 | 10784730 ~ 10879626 (+) | False | XLOC_012636 |
| TCONS_00025256 | other | upstream | 100533 | 9607916 ~ 9608042 (+) | True | XLOC_012622 |
| TCONS_00025251 | other | upstream | 484047 | 9224413 ~ 9224528 (+) | True | XLOC_012619 |
| TCONS_00025249 | other | upstream | 596643 | 9111816 ~ 9111932 (+) | True | XLOC_012617 |
| TCONS_00025241 | other | upstream | 798963 | 8901862 ~ 8909612 (+) | False | XLOC_012614 |
| TCONS_00025238 | other | upstream | 815778 | 8889888 ~ 8892797 (+) | False | XLOC_012613 |
| TCONS_00025264 | other | downstream | 95252 | 9811020 ~ 9811152 (+) | True | XLOC_012625 |
| TCONS_00025267 | other | downstream | 300740 | 10016508 ~ 10016626 (+) | True | XLOC_012628 |
| TCONS_00025271 | other | downstream | 954893 | 10670661 ~ 10670738 (+) | True | XLOC_012633 |
| TCONS_00025273 | other | downstream | 1026281 | 10742049 ~ 10742163 (+) | True | XLOC_012635 |
| TCONS_00025282 | other | downstream | 1741445 | 11457213 ~ 11457330 (+) | True | XLOC_012639 |
