RNA id: TCONS_00025265


Basic Information

Item Value
RNA id TCONS_00025265
length 1535
lncRNA type lincRNA
GC content 0.37
exon number 3
gene id XLOC_012626
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 9980878 ~ 9983912 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTGATCAATGACTTTCTTCATAGCCTATAAACATTGTCTTAtgcatacacagcaaattcatcagagttaaattctcggtgttgaagcatttcagagtaaagtgttgacgttaaagagttagattttgataaatgaatataataagagttaaaattgattttattcagtgcgaaatcaaggagttatcttttttacacttggtggtgttatttccaacatccgggaattcatgcagctcCAGTCACTGAaaaattttccagacgccattttccatctgaagtttagaacagcaactgccacagttctctatacaataacacaagaccctgtgacggtggctgattagagacggatggtgtatttccagagttggtgaaatgaccaagcacaccttcttggtcatatgtggtgataataacgaaggtatgtttgataaagttctgtatttgtttcacaataagctgagagggtattagagcattagagaataacaaatgacatgaaggtgataagttttgtattgtgggtgaactgttacttaaataatgttttgctctttgctttgcacttttcctcttctgcttatcctaatagttaagattatatttggacctgaaacatctgctagactccaggaaaggtggcgtcaatactggtccTGAAAGGGcccaacaagttgaatctggtaaagaaacacgcacgcacgcacacacacacacacacacacgcacacgcttacagaaaactgtaagtttatggatattttttacactgtggccaatattttggggaagtcagcatcactaaatgatataaaagattttaagctcctctaaattttgctccaagtgttgtgttaaattcaagattctggacagacagctgcctgtttttccagttctagtcatagtgattaacctaattgtttttggagatccaacagtgatgtatgtgtttttttttctacttttccatatcctgtcacctcaaccagctgggagagtcaagttgtggatcatcatgaagattttcaaaagtcatgctggagtcttgaagagttcttagatgagcatcaccctatatccgtgcatcaggaaccaccagacgagcgatcagcagctactacatcgtcatggataaaaaggtcatcctgtggctgggaagcacttcattcacaggacatgcttgatgagatttcctagctccagtttgttttcacacaagtttccagcatttataccttcatttaaattgctgtgtttgatatggaggaacaaggaaacaccagaagtgaaagatttgcacgccaagttgtttaaaatgtaagtttggaccaaaggactaaaacagcctttttgagcactggtcatacatattttgttgatactgtctgtactaataaaacatttaaagcatatttgacattgttgcattttaaaaactgaatgaattgttgaagtggtgaatgttttcaaataaaatgttttttcttttgtaatttacagtctatttgagttttttaccatatttacac

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0038092 nodal signaling pathway biological_process
GO:0032924 activin receptor signaling pathway biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:1900107 regulation of nodal signaling pathway biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0019887 protein kinase regulator activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function
GO:0019207 kinase regulator activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194392

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025224 lncRNA upstream 1642721 8334388 ~ 8338157 (+) False XLOC_012608
TCONS_00025226 lncRNA upstream 1642721 8335139 ~ 8338157 (+) True XLOC_012608
TCONS_00025225 lncRNA upstream 1645499 8334502 ~ 8335379 (+) False XLOC_012608
TCONS_00025221 lncRNA upstream 1877682 8100905 ~ 8103196 (+) True XLOC_012606
TCONS_00027055 lncRNA upstream 2317221 7651750 ~ 7663657 (+) False XLOC_012602
TCONS_00026870 lncRNA downstream 101729 10085641 ~ 10089253 (+) True XLOC_012629
TCONS_00027057 lncRNA downstream 119029 10102941 ~ 10190202 (+) False XLOC_012630
TCONS_00027058 lncRNA downstream 122363 10106275 ~ 10151626 (+) False XLOC_012630
TCONS_00025269 lncRNA downstream 122363 10106275 ~ 10157525 (+) False XLOC_012630
TCONS_00027059 lncRNA downstream 122363 10106275 ~ 10190202 (+) False XLOC_012630
TCONS_00025262 mRNA upstream 32274 9749375 ~ 9948604 (+) False XLOC_012624
TCONS_00025263 mRNA upstream 160579 9810642 ~ 9820299 (+) True XLOC_012624
TCONS_00025258 mRNA upstream 258587 9635178 ~ 9722291 (+) False XLOC_012623
TCONS_00025259 mRNA upstream 258587 9637744 ~ 9722291 (+) False XLOC_012623
TCONS_00025260 mRNA upstream 258587 9641210 ~ 9722291 (+) False XLOC_012623
TCONS_00025266 mRNA downstream 12901 9996813 ~ 10062630 (+) True XLOC_012627
TCONS_00025272 mRNA downstream 705860 10689772 ~ 10690365 (+) True XLOC_012634
TCONS_00025274 mRNA downstream 800818 10784730 ~ 10879626 (+) False XLOC_012636
TCONS_00025275 mRNA downstream 836518 10820430 ~ 10921383 (+) False XLOC_012636
TCONS_00025276 mRNA downstream 856159 10840071 ~ 10847449 (+) False XLOC_012636
TCONS_00025264 other upstream 169726 9811020 ~ 9811152 (+) True XLOC_012625
TCONS_00025261 other upstream 265110 9708575 ~ 9715768 (+) True XLOC_012623
TCONS_00025256 other upstream 372836 9607916 ~ 9608042 (+) True XLOC_012622
TCONS_00025251 other upstream 756350 9224413 ~ 9224528 (+) True XLOC_012619
TCONS_00025249 other upstream 868946 9111816 ~ 9111932 (+) True XLOC_012617
TCONS_00025267 other downstream 32596 10016508 ~ 10016626 (+) True XLOC_012628
TCONS_00025271 other downstream 686749 10670661 ~ 10670738 (+) True XLOC_012633
TCONS_00025273 other downstream 758137 10742049 ~ 10742163 (+) True XLOC_012635
TCONS_00025282 other downstream 1473301 11457213 ~ 11457330 (+) True XLOC_012639
TCONS_00025284 other downstream 1846993 11830905 ~ 11831020 (+) True XLOC_012642

Expression Profile

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