RNA id: TCONS_00025437


Basic Information

Item Value
RNA id TCONS_00025437
length 1097
lncRNA type antisense_over
GC content 0.51
exon number 4
gene id XLOC_012734
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18113043 ~ 18379358 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTAGGACAGTGACCAACACTGACAGTTACATCAGCTATAAAAGTCATCAAACGCGTTATAAATGTGATCATCTGGATTTATGTCTGCTTGTGAGCACGGTGTTATAGAGTGGGGTGGCAGAAAGGTCGCGCGAGATGCACGCCAAATGCTTCCTGCTGTGGCACGTGCCAGGTGCCTCTCCGGGCGCGCGCTTGGCCCGTTGACTGGAGTGAGGCGCGTCATCCATCTCTCCCGCGCTGACTAAATTACCGGCGGAGACTTCGGCCTTCACACACTACAGCGGCCCGCAACGACGAAAAACAGCCATATGGCGTCTCTACTGGAAGTTTGCTGTTGCCATTCAAGAATATGCTTCTTAAATACAACTGCAGTAAGCCAAAAGTGATGGGCGGATAATGTTTGAAGCGATTGGGGGAATTGGACGAACATGATAGCTGCATTCGCACCCCTTCAGGCAGGATCCCCAGGGAACACACTCCGCTACAGTTTTCTCTCCCCCCCCCCATCCACTCCACAGCTCGGAGATGCACGGAGACGATAACACACTCTGTGCATAAAGTGAAGTGTGGAGCTGCAGCAGCGGTTTGGCGGAGCCTCTGGAAGGATTGGAGGAAGCTGCTGAGAAAAGCAGGAACGATAGCAGACGAAGAGGATCTGTAGGCAGGACTCAATCCCATGTCTACAGGATTGAGGAGATGCTGTGATGTGTCCGCGGTTGTAGTGGGCTCATGCTGAGCGGGGAGATTGAAGAGGGATACTCCAGAGCACACCCTCCACGAGCGAGGGagaaaagagagatctgtgatgTGGTGAGATGAAGGAGACGGAGGTATAGATGATGTGGTGCAGCGGGTGGGGACAGTCTCGTAAGCTGGATGATCACAGCCACACCAGCCCCCCTCGTCTGCAGCATCACTCCAAAACATCCCTAACAGATCAATCCATTACTTACTGAAACACACCGTGGCCTGTCTGTGATTTTTGTCTGCTTGTCACGGTGAGAGAATGCAAGTTGCTCTACAGTTCTTAAGACAAGTAGATGTTGCAGGAAAACAAGAagtaataatacattatatatcaACACAATGTGAAAAG

Function

GO:

id name namespace
GO:0048477 oogenesis biological_process
GO:1905516 positive regulation of fertilization biological_process
GO:0035803 egg coat formation biological_process
GO:0043902 positive regulation of multi-organism process biological_process
GO:0035036 sperm-egg recognition biological_process
GO:0080154 regulation of fertilization biological_process
GO:0007281 germ cell development biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:0007340 acrosome reaction biological_process
GO:0009988 cell-cell recognition biological_process
GO:2000344 positive regulation of acrosome reaction biological_process
GO:0060046 regulation of acrosome reaction biological_process
GO:0032190 acrosin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025404 lncRNA upstream 527292 17583483 ~ 17585751 (+) True XLOC_012724
TCONS_00027083 lncRNA upstream 629819 17473975 ~ 17483224 (+) True XLOC_012719
TCONS_00027084 lncRNA upstream 636160 17476375 ~ 17476883 (+) True XLOC_012720
TCONS_00027082 lncRNA upstream 932966 17178493 ~ 17180077 (+) True XLOC_012716
TCONS_00027081 lncRNA upstream 1124829 16986090 ~ 16988214 (+) False XLOC_012712
TCONS_00026888 lncRNA downstream 425975 18675673 ~ 18676497 (+) False XLOC_012739
TCONS_00026889 lncRNA downstream 459191 18708889 ~ 18709767 (+) False XLOC_012740
TCONS_00026890 lncRNA downstream 483449 18733147 ~ 18733971 (+) False XLOC_012742
TCONS_00027096 lncRNA downstream 483479 18733177 ~ 18770894 (+) False XLOC_012742
TCONS_00027097 lncRNA downstream 491129 18740827 ~ 18812908 (+) True XLOC_012743
TCONS_00025436 mRNA upstream 3011 18104235 ~ 18110032 (+) True XLOC_012733
TCONS_00025435 mRNA upstream 52499 18000887 ~ 18060544 (+) True XLOC_012732
TCONS_00025434 mRNA upstream 66299 18000695 ~ 18046744 (+) False XLOC_012732
TCONS_00025430 mRNA upstream 115569 17827149 ~ 17997474 (+) False XLOC_012731
TCONS_00025439 mRNA downstream 156294 18405992 ~ 18422543 (+) True XLOC_012736
TCONS_00025440 mRNA downstream 189634 18439332 ~ 18472257 (+) False XLOC_012737
TCONS_00025441 mRNA downstream 205331 18455029 ~ 18470929 (+) True XLOC_012737
TCONS_00025442 mRNA downstream 362690 18612388 ~ 18631082 (+) True XLOC_012738
TCONS_00025450 mRNA downstream 611661 18861359 ~ 18870284 (+) False XLOC_012746
TCONS_00025433 other upstream 118675 17963926 ~ 17994368 (+) True XLOC_012731
TCONS_00025420 other upstream 437588 17675340 ~ 17675455 (+) True XLOC_012728
TCONS_00025408 other upstream 504472 17600761 ~ 17608571 (+) False XLOC_012725
TCONS_00025409 other upstream 507248 17600946 ~ 17605795 (+) False XLOC_012725
TCONS_00025401 other upstream 532798 17580159 ~ 17580245 (+) True XLOC_012723
TCONS_00025438 other downstream 1801 18251499 ~ 18251615 (+) True XLOC_012735
TCONS_00025443 other downstream 426004 18675702 ~ 18676884 (+) True XLOC_012739
TCONS_00025444 other downstream 459351 18709049 ~ 18710155 (+) True XLOC_012740
TCONS_00025445 other downstream 476280 18725978 ~ 18726093 (+) True XLOC_012741
TCONS_00025446 other downstream 483727 18733425 ~ 18734359 (+) False XLOC_012742