RNA id: TCONS_00026896


Basic Information

Item Value
RNA id TCONS_00026896
length 610
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_012756
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 19413097 ~ 19416040 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACGTTTGTAGTTATATTGCCTGCAATATTCAGTTTTTTCATTATTCACTTACCAACTATAGGATTCAAGTACCTCTGTGGTGAGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATATGTGGTGGGCATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACGCCAGGGCTATGAACTTGCAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTCAAAGACATTTTGTGGGACTTGACACACTGCGTCCAAAGTCTTCCTCCTGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCATCACTTTTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCAACTTCTTCAGTTTCTGGATAAGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatGGGGCaaagtttgttttgttatgtCAAATGCTGAGATCAGaggcactttatttttttatttcaatgttgTAGTACATATGAAAATGTACTGTACTGTGCAC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034720 histone H3-K4 demethylation biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0070544 histone H3-K36 demethylation biological_process
GO:0071599 otic vesicle development biological_process
GO:0006396 RNA processing biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0042471 ear morphogenesis biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0072175 epithelial tube formation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0035148 tube formation biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0030684 preribosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025458 lncRNA upstream 381564 19025989 ~ 19033213 (+) True XLOC_012752
TCONS_00027099 lncRNA upstream 445011 18968890 ~ 18969766 (+) True XLOC_012749
TCONS_00027098 lncRNA upstream 503162 18910370 ~ 18911615 (+) True XLOC_012748
TCONS_00025453 lncRNA upstream 503516 18910366 ~ 18911261 (+) False XLOC_012748
TCONS_00026893 lncRNA upstream 586680 18827219 ~ 18828097 (+) False XLOC_012745
TCONS_00025465 lncRNA downstream 41026 19456836 ~ 19462743 (+) True XLOC_012758
TCONS_00027101 lncRNA downstream 109031 19524841 ~ 19620953 (+) False XLOC_012759
TCONS_00027102 lncRNA downstream 109052 19524862 ~ 19620953 (+) True XLOC_012759
TCONS_00025481 lncRNA downstream 673571 20089381 ~ 20208129 (+) False XLOC_012769
TCONS_00027103 lncRNA downstream 673848 20089658 ~ 20091342 (+) True XLOC_012769
TCONS_00025462 mRNA upstream 275625 19131773 ~ 19139152 (+) True XLOC_012755
TCONS_00025460 mRNA upstream 290465 19120984 ~ 19124312 (+) False XLOC_012754
TCONS_00025459 mRNA upstream 310813 19101679 ~ 19103964 (+) True XLOC_012753
TCONS_00025457 mRNA upstream 375820 19008560 ~ 19038957 (+) False XLOC_012751
TCONS_00025463 mRNA downstream 3310 19419120 ~ 19451165 (+) True XLOC_012757
TCONS_00025464 mRNA downstream 40838 19456648 ~ 19472646 (+) False XLOC_012758
TCONS_00025466 mRNA downstream 232465 19648275 ~ 19699061 (+) True XLOC_012760
TCONS_00025467 mRNA downstream 357064 19772874 ~ 19806209 (+) True XLOC_012761
TCONS_00025468 mRNA downstream 404198 19820008 ~ 19880934 (+) False XLOC_012762
TCONS_00025461 other upstream 290698 19123332 ~ 19124079 (+) True XLOC_012754
TCONS_00025449 other upstream 586292 18827249 ~ 18828485 (+) True XLOC_012745
TCONS_00025448 other upstream 614725 18799118 ~ 18800052 (+) True XLOC_012744
TCONS_00025447 other upstream 643883 18770075 ~ 18770894 (+) True XLOC_012742
TCONS_00025446 other upstream 680418 18733425 ~ 18734359 (+) False XLOC_012742
TCONS_00025507 other downstream 1605889 21021699 ~ 21023601 (+) True XLOC_012781
TCONS_00025513 other downstream 1775855 21191665 ~ 21191784 (+) True XLOC_012787
TCONS_00025547 other downstream 3771609 23187419 ~ 23249572 (+) False XLOC_012803
TCONS_00025560 other downstream 4056336 23472146 ~ 23472260 (+) True XLOC_012806
TCONS_00025562 other downstream 5061716 24477526 ~ 24483172 (+) False XLOC_012809

Expression Profile

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