RNA id: TU21554


Basic Information

Item Value
RNA id TU21554
length 1319
lncRNA type sense_over
GC content 0.49
exon number 4
gene id LOC118944665
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19553236 ~ 19561396 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCTATCGGTAAGCCTCTGTACATTAGAGACACTTCCAGGCGAGGTGTAATTAGACTGGTTGTTTGTTCAGCTGAAACATGAAGAATGGCATTTCTATAAACAGGCAGGCAAAGAAATGTTAACAATAGGCACATGAGCAAATTAGTTGTGTTCTGTTTCCATAGCTTGTATCTTATCTGATTCTACACCATCGTCACACCTATTACCCGCTGACAGGCCCTTGTTCTATTCACTAGTGTAGTTTAAAGTCCTTCTCCACTTCCTTATTTTGGTTTTTCTCTCTGTACGTCTAGTGCCACTGATTGCTGCAGGCCCTTCAGGATCGACGTGCTGCAAGACCTGGTGAACTTCCACTGCAGGGTGCCTGTCATGCCTTTCAATGAGCTGCTGACTGTAGCTTGTGGACAGGTTAACCGTGCAAGGGAGTTGCATTAGATGCAGCTGGGGATGCCGTACTCCACTAGACCACACAGATTGGATCCCCGCCTGTCCTTGAAGACCAGACGTTTTTTGGGTTCCACTGGGAGTTTGGTTGCACAGCTGAAACTTTGTGGCAATGGAGAGTCGTTGAAAACACACATGGAGTGGTTGATATTGGGTCTGCAGGATGATCAAGATTTCTCCCTACGGATTAGAGGTCTAACTTCCTGATCCGGTGACTCTGTAGTGAGGTCGACGGTGTGATAGGTTACTGCAAAGGTGACAACAGATGGTATCTAGGCATAGCAGGGACAATTTTCCCAAGGACCAGTGTGGACCTCACACCCCCTATAACCAGCTGAAGAAATGGTGAAAATGGCTttcactacagccctgtcctTCCCCACTTCTACCTGAGACGTGAGTCCGAGCCAGCAACCTGTACCCAGCATCCAGTCGAAGCTATCAACTGCCTTTTCTCTCATGCCTTTCCTCTCAGGGGTGCGACATGAGTCCACGTGGAgggagcatggagagagatcccGTCCAAACTTCTCTCATGCTGCTGGTATATTGGTTGGCaaatggacaagacataatggGTGATAAAGGCGGTGACAACCCAGGTGAGACATTGAAATCAGGACATTATCATGGACCAACCACTTTGAACTTTGAATCTATCTGAAGAAGATAATGAAGAGATGCCATAAGAATGAGTGCCTGAAGCAGGGGTGGGTCAACTGTGCCCATAATTGATTTAGGGTTGCCCTAAATTGTTTATTTGGGGTATCAAGTTGATTGTACAGGTCTACACACTGCAAAATGTATAGTAATTTAGACTAAGAATGCATTAAGATACTGATCTGTAATTATGACCGTGATAAATCAATGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21550 lncRNA upstream 1215 19551844 ~ 19552057 (+) True G18473
TU21531 lncRNA upstream 47425 19505523 ~ 19505847 (+) True G18454
TU21428 lncRNA upstream 214019 19337019 ~ 19339253 (+) True G18364
TU21425 lncRNA upstream 217356 19335510 ~ 19335916 (+) True G18361
TU21403 lncRNA upstream 244288 19308777 ~ 19308984 (+) True G18341
TU21561 lncRNA downstream 1510 19562906 ~ 19563403 (+) True G18480
TU21563 lncRNA downstream 4544 19565940 ~ 19617578 (+) True G18482
TU21566 lncRNA downstream 5418 19566814 ~ 19618798 (+) True G18484
TU21587 lncRNA downstream 68993 19630389 ~ 19633111 (+) True G18501
TU21603 lncRNA downstream 99935 19661331 ~ 19661968 (+) True G18515
XM_021580282.2 mRNA upstream 3620 19538738 ~ 19549652 (+) True LOC110502309
XM_021579973.2 mRNA upstream 16716 19510958 ~ 19536556 (+) False tpm4a
XM_021580074.2 mRNA upstream 16716 19520843 ~ 19536556 (+) True tpm4a
XM_021580022.2 mRNA upstream 17912 19510957 ~ 19535360 (+) False tpm4a
XM_021580605.2 mRNA downstream 7288 19568684 ~ 19573437 (+) False LOC110502506
XM_021580824.2 mRNA downstream 21783 19583179 ~ 19597535 (+) True LOC110502566
XM_021580947.2 mRNA downstream 58789 19620185 ~ 19628041 (+) False LOC110502681
XM_036963710.1 mRNA downstream 61284 19622680 ~ 19628041 (+) True LOC110502681
XM_021581594.2 mRNA downstream 75317 19636713 ~ 19641888 (+) False LOC110503198
TU20408 other upstream 597064 18882723 ~ 18956208 (+) True G17420
TU19716 other upstream 1562096 17975964 ~ 17991176 (+) True ccdc124
TU19135 other upstream 1888264 17654207 ~ 17665008 (+) False LOC110495874
TU18429 other upstream 2585482 16963057 ~ 16967790 (+) True LOC110492876
TU18393 other upstream 2632863 16916499 ~ 16920409 (+) True LOC110492606
TU21562 other downstream 3453 19564849 ~ 19565221 (+) True G18481
TU21568 other downstream 7389 19568785 ~ 19575028 (+) True LOC110502506
TU22177 other downstream 302395 19863791 ~ 19865605 (+) True LOC110503939
TU22214 other downstream 354190 19915586 ~ 19915832 (+) True G19083
TU22535 other downstream 681249 20242645 ~ 20242875 (+) True G19359

Expression Profile