RNA id: XM_036979545.1


Basic Information

Item Value
RNA id XM_036979545.1
length 1567
RNA type mRNA
GC content 0.47
exon number 9
gene id c1h11orf49
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50856580 ~ 50871347 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACCCCAAACATCCGGCACTGTTTCCCATGGAAACGAAGTCTGTGCCGAAACCTACCAAGGCTAGATCGCCACAGTAACATGAACATGCAATGTCAGCTATAAAATTCAAGTAGTGAATacattaaaatataaatatataacctTATAATTACGGACGCAGCAATGTGCACGAAAATGAATCCTGATCGTTTCAACCCTACCCTCTCAGTTGATGAGTACCTTGCTGAGACCAACGTGCTTTTCTACCTGAACGATGCTGTGACCCAGCTTCTGGAGCACAAGGAGGAATACACCCAGTTTGGCATCGTCCGTTACTTTGCAGAATActTTAGCAGTGTGAAGAACGGCAACCACGTACTGTTCAGAGAGTTTGGCTACATCAAGGCCACAGCTCATAACAGGGCCTCCTTCATCCGCGTCCTCTGGAGGTGCTTCCGACAGATCGGGAAAAATGGAGacctcctgGCCATGTTGGAGTACAGCTCCCTTCTGCAGCTCCTCTGTCCAGACTTCCCAGTGGAGATGGTACAACATGCAGCAAGGATAGTGCTAATGGATGATGCCATGGACTGCCTCATGTCCTTCTCGGATTTCCTCTTCTCTTTCCAAATCCAGTTCTACTTCGAAGAGTTCCTGGAGAGTATTGCCGTGATCTACCAGGACCTGCTGTCAGGGAAAAGCCCCAACACTGTGATCGTCCCAACCTCTACCTCAGTGGAACAGCTCCCCCAGGTGGCCACAGAGGAAACTGAGGCCCAGGAAGGAGTGGACTCCTCTGTCTTTTTAGAGTGCATCGAGGTGCTTTGTGAAAGGTTCAAACACAACCATCCTTCTACATCTGCCATTAGAGAGGTTCTGGAGCTAACACAGAGAGTGACATTctatggctttgtgatggctctGGTCAGACATGAGGGCATCAACCAGGACATTGTGTTTGTAATTGAGTTGACCTTGCTAGGTGCCCTACCAAACAAGTCAGAGCTTCTCATTGACCCTGAGATGGACCAGGAAGTGGAGAAACTCATTGCCCAGATCGCTATCAGTCCTACgtccaacagcagcagcagtgtaccAGGACACAAGGAGCCCCCTAGGAAGGCCTCCCCACGCAAGTCCCTTCACCACCGCAAGAGGATCGAGATGGAGAGTGACGGATCCACCGAGGAGACTGACTCCTCAGAGAACTGAGCCTGGACTGAGGCTGACCTCCCAATGGCCCCTTGGCCTCCCATTAACACACTTATACTTCCACTGGCGGACTAAACTTGCCATTAACCCTGTTACAACTATAGTGTCTGTGTTACAACGGAGTAGGCTTATTAGGCTTATTACTCTAGGCAAACTTTCAGTAGAACTGCTATATATTTAGTACTATgagaacctgtctgtctgagaAGTGTGAAAGTTTTATTTTGCGATCTCTGCAGGTTGGAACTGTAATTCAGTGTTCCCTACCTGGTAACACGCATTCTTGTATGTAGTTATTTATGATGTGATATATCTGTATGTAATTTATGATTACCAACCCTGTATCACCTAATATAAAAATTGTTGCTGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61989 lncRNA upstream 3976 50852281 ~ 50852604 (+) True G55664
TU61405 lncRNA upstream 39132 50810146 ~ 50817448 (+) True G55115
TU61386 lncRNA upstream 77011 50777910 ~ 50779569 (+) True G55101
TU61336 lncRNA upstream 82187 50701597 ~ 50774393 (+) True G55058
TU61349 lncRNA upstream 136357 50718682 ~ 50720223 (+) True G55070
TU62017 lncRNA downstream 19417 50890764 ~ 50891884 (+) True G55690
TU62060 lncRNA downstream 80386 50951733 ~ 50951962 (+) True G55731
TU62238 lncRNA downstream 221385 51092732 ~ 51094575 (+) True G55908
TU62296 lncRNA downstream 304287 51175634 ~ 51194020 (+) True G55963
TU62496 lncRNA downstream 367983 51239330 ~ 51239638 (+) True G56152
XM_021604210.2 mRNA upstream 56200 50792196 ~ 50800380 (+) False LOC110524496
XM_021604218.2 mRNA upstream 56200 50792197 ~ 50800380 (+) False LOC110524496
XM_021604227.2 mRNA upstream 56200 50792197 ~ 50800380 (+) False LOC110524496
XM_021604236.2 mRNA upstream 56200 50792198 ~ 50800380 (+) True LOC110524496
XM_021604185.2 mRNA upstream 182405 50600635 ~ 50674175 (+) False LOC110524482
XR_005051360.1 mRNA downstream 120636 50991983 ~ 50993119 (+) True LOC118964313
XM_021604316.2 mRNA downstream 200349 51071696 ~ 51075445 (+) True LOC110524544
XR_005051364.1 mRNA downstream 283160 51154507 ~ 51155396 (+) True LOC118964319
XM_021604338.2 mRNA downstream 292730 51164077 ~ 51170344 (+) True acte1
XM_036979571.1 mRNA downstream 343483 51214830 ~ 51341633 (+) False shank2b
TU60888 other upstream 772584 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 1962668 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 2473323 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 2831622 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 3597682 47227246 ~ 47258898 (+) True LOC110520864
TU62774 other downstream 578475 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 2794868 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 3116793 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 3173502 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 3849841 54721188 ~ 54721463 (+) True G59963

Expression Profile