RNA id: XM_021606709.2


Basic Information

Item Value
RNA id XM_021606709.2
length 4540
RNA type mRNA
GC content 0.52
exon number 34
gene id rrp12
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60403081 ~ 60427711 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagaattggGCGAACGCATCCCCGCAACGTCATCAGGAGAGCGACAGAGCTACTTGCGACAAATGCTTTGCTGAGCCAGAGTGGTTTGTATTATTTGAAAATATGGTGAAATCTGGAAAATTAAAATCTGGGACCGCATCAAAACTGAAGCGATGGAAAAAGGGACACAGCAGCGACTCGAACCCCCAGACGAGCCGATTCAGACAGGCTGCCAAAAGCCGTTTCTTCAGCCGCCCCTCGGaGAAGAGTGACCTGACAGTTGATGCACTCAAGCTGCACAACGAGCTGCAGGCAGGAACCCTGGAGAGGGGTGCGGGTGACCGGGGAGATGCCTGTATGGAGGAGACGGCAGAGCAGGCCCTTTCAGAGAGGAGCGCAGGGACCTTCCTCAGCGGGTTGTCGGACTGCTCTAACCTCACCTTCAGAAAGGTGCAGCGCTTCTGGGAGTCCAACTCAGCTGCCCATAAAGAGATATGTGCAGTGCTGGCTGCGGTGACTGAGGTGATTCGATctcagggagggaaggagacggAAACAGAGTACTTTGCAGCTCTGATGACCACCCTGGAGGCAGTGGATTCAGGGGAGTCTCTGGCTGCTGTAGCCTACCTCCTCAACCTGGTTATGAAACGGGTTCCAGCACCAGTGTTGATTTGTAAGTTCTCTGACACGGCCAAAGCTCTGATGGACGTCATGTCCACCCTGGCCAGCTCAGAGTCCGCCTCCGCACTCagatggATCCTGTCGTGCCTCTCCACTCTTTTGCGGAAGCAGGATGTTACAGTGTGGAGTTACCCGTCTACTCTGCAGACATACCACGGTCTACTCAGCTTCACTGTCCACAGCAAGCCCAAGATCCGTAAAGCAGCGCAGCACGGTGTGTGTTCCATCCTGAGAGGCAGTGACTTACTGTTTACAGACAACGCCCCGACCCACCACCCTGCTGCCGCGATGGCCGCCAAGTTCTGCATCAAAGAGATTGAACAGGCAGGAGgCAGTAAGGAGGACACCACCACCCTGCACGTCCTGGGTCTCCTGAAGGACCTCATGGTCACCTTCCCTCTCAATGCCGTCAAGTCCTGCTGTGAGACTCTGCTCAGGGTGATGACCCTCAGCCACGTGttGGTGACAGCATGTGCCATGCAGGCCTTCCATAAGCTGTTCAGTGGGAAACCCAACCCTGTTACCCTGTCTGCTGAACTCAATGCTCAGATCATCACGGCCCTGTATGACTACCTGCCCAGTGAGAATGACTTGCAGCCTCTACTAGCCTGGCTGGCTGTCATGGAGAAAGCCCACGTTCACCTGGCCGGtgttcAGTCATCTCTAAGTCTGGGTCATCTCCCTCGTCTCTTCTCCACAGCCATGTCCTGCCTCCTGTCACCTCACCCACAAGTCGTCTCTGCTGCCACCAATACACTCAAGACTTTGCTGTCGGAGTGTGTGGCTCCTCGCATGGAGGAGATCGGCCCCGTCAGCCCCACCGCTTCCTCTGGAAACCCTTCCTACGTCTGCAAGATGTTCCGtatcgTGGAGGAGGGTCTGTCGTATCGTTTCCACGCCTCCTGGCCGTTTGTTCTGCAGTTGCTGGGCTGTTTCTACAGAGCAgcagggaaacacacacacccggTCATGACCAAGtctctccagtctctagcGGACCTGCGCTCCACCCCCCGGTTCCCGTTCTGTGGTGAGCTGGACCTGGCTGTAGGTGGCGCTGTAGAGAGCATGGGACCTGAAGTACTGCTGACCGCTGTACCGCTCAACATCACTGGACTGGAagACAATCTGGAGTTCCCTCGTAGTTGGTTGATCCCTGTCATACGGGATCACGTTAAGAACACGCAACTGGCTTACTACACATCATATCTCCTGCCGCTCGCTGCCACGCTCCGACAGAGAGCTGAGGAGCTGGAGAAGGCTGGACAGAAACTGGAGGCTAAAGTCTACAAGACACTCCAGCTGCAGATCTGGACCATGCTGCCAGGGTTCTGTGTGGGGCCCTTGGACCTGCTGGTGTCGTTTAAAGGTGTAGCAAGGGCACTGGGCATGGCCATCAACGAACGGCCTGACCTACGACTGACCATCTGCCAGGCCATACGCACACTCATCACCAAGAGCTGTAACACCGAAGAGGAGAAGGCGGAGGTGGGGCGTTTTGCTAAGAACTTCCTGCCCATCCTGTTCAACGTGTTCAGCCAGCAGCCTGCTCCTGGAGACATTGCCCCCTACAGGATGGCTGTCCTAGACACCATTAAAGTCTACCTGACTGTCACAGACCCACAGATGGTGTGTACCTTCCTATCGAAAGCTACAGAAAGACTCAGCAGCCCAGACAGCACTGAGTTCATACGGTTGTCTGTCATGGACCTGATGGTTGCCATGGCACCCTGTGTAGATGAGGTCACAATGAGTCAGACCTTTGAGCTGATTAGGCCATACCTGGAGAAtaaggagccacacatgcagAAGAAGGCATACCGCGTATTGGAGGAGATGTgcggtggagagagggaggagtgtagATCTTTCGTTCTCTCTCACCTAGAGACGCTCAAACACGTTCTGCTGGGGACACTGAAGAATGCTTCATCTCCCGCCAAGAGGCCCAGACTAAAGTGTCTTATCCACATTGTGAAACAGCTTAGTGATGAACACAGAGACTTCATCACTGCCCTGCTACCagagGTGATCATATGTACTAAGGAGGTGTCAGTGGGAGCTCGTAAAAGCGCCTACACTCTACTGGTGGAGATAGGAAACGCTTTTATCAGGTTCTGTGGAGATGCCAAAGAAGCCTTGGAGCAGTACCTACTGTTGGTCTACGTGGGGCTGACCGGCTCGGTCACGATGATCACATGTACAGTCCTGGCTCTCACCAGACTGGTCTTTGAGTACAAAGacTCTATAGACATGGGATCGATGGAGCACCTCCTACACAACGTGTGCCTGCTGCTGACGTCTCGGACCAGGGAGATTGTGAAAGCAGCGCTCAGCTTTGTCAAGGTCATCCTCTTCGTCATGGATCCCAAGACACTGGCTGGACACGTCACTGTGATGatggaggGTGTTGGGAACATCAAGGATGACGTTAGAAGACACTTCAGGACGAAACTGAAAAACATTTTCACCAAGTTCATCAGGAAGTTTGGGTTTGAGTTGGTGAAAAGCAAGCTGCCTGTGGAGCATCATAAGGTGTTGGTGAACATCCGTAAGGCTGAGGCCAGAACCAAGAGATCGAGACTGGCGGACGAAGACCACGACGACTCAGACAGCGGGGACGACAAGCCAAAAGCCCGGGGAGCGAGtATTGAGGAGATCTTGGCCGAGTCGGACTCTGATATGTCAGATGACGAAAGGCCTAAGGGCGCTAAGACCCAGAAGAAGCCCACAAAGCAGAAGGGGCGGGCCTGGCTGAAGGAGGGACAAGGAGACGAACCACTCAACTTCCTGGATCCCACTGTCTCCCAGAGGGTCTTGGccacCAACCCAGACATGAAGAAGAGGGCAAAAGTTCAGCACAACTTCAAGGTCACGTCAGACGGAAGACTCATCATCAAAGAGGACAATGACGAGGGAGACAAGACTAAAGATgatgagggagagatgaaagACATTCTGGAGGAGGCTGGAGTCAAGAGTataAAGACTAAGAGGAGGACATTCCGGGATGGTCACTACGATGATGACATGGAGATTGAACCCCAGCTGAAATACAAAGCTGGAGGCTCGGGGATCCACAGACCTCTGGGTGGGAGCAGAGACCTGGGGGGAGACTACAAGGCCAAGAAGGGTAAAGGAGATGtgaagaggaaaggaaaggtTGATCCATATGCCTACATCCCTCTGAGGAAAGCACAGCTCAACCGCAGgaagAAAGCAAAGATGCAGGGCCAGTTTAAAGGCATGGTGAGAGGGGCCCAGAAGGGAGCGCAGTCTGGGAAGAGGATGCAAAGGAACAAGAGGAGGGCCTGAAAAGTTTACATCCCAATGGTTGAATGTGTGTCCTTCTGCCTGTTTTCCAAGAGGGTCTGTGCATAGAAATCTAATTAAAGCTAATTCTATGGGTCTGAGTCTATGCAGTTTATTGCTCAGGCATACCCCCCCTGAACAAGCAGTCCATGTATGTCTGCGAGAAACAGAATGGGAGAAGGAACGAGAAGAGGATTTGAAAAGGTCTTCAAATGGATCTGTAGATTTCTCTTTTGGGGGGTCTTGCCTAATTCCCATTGTTATCAATGGATACAATCAGGCATACACATGAAACTTTAGCTTTATAGGTGTGTTCAATTAAAATGTGTAAAGATGGATAAACatctgtttttaaatgtatttatgttcCCTACTTTAAAGGATGGGAAAAAAAATGTTGATGGTGTGAAAATTAAGAATGACTTGTTATTGCTCTgtttgaccactagatggtggtCTAGATTGCGGTTGAATATAAACAAGAGTTGGTTAAAATTCATATTCCAGCGCATGAAATTAGGATTACTGTTTGAATGTATTAAACTATTGATTCATCAGACTTAAA

Function

GO: NA

KEGG:

id description
K14794 RRP12; ribosomal RNA-processing protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73524 lncRNA upstream 82248 60320593 ~ 60320833 (+) True G66375
TU73521 lncRNA upstream 86545 60316305 ~ 60316536 (+) True G66372
TU73519 lncRNA upstream 90916 60311506 ~ 60312165 (+) True G66370
TU73455 lncRNA upstream 222832 60179896 ~ 60180249 (+) True G66310
TU73453 lncRNA upstream 226774 60175978 ~ 60176307 (+) True G66308
TU73588 lncRNA downstream 67022 60494733 ~ 60495095 (+) True G66435
TU73639 lncRNA downstream 77871 60505582 ~ 60505809 (+) True G66475
TU73644 lncRNA downstream 83959 60511670 ~ 60512034 (+) True G66480
TU73652 lncRNA downstream 96528 60524239 ~ 60559757 (+) True G66487
TU74675 lncRNA downstream 580818 61008529 ~ 61008729 (+) True G67445
XM_021599218.2 mRNA upstream 11455 60374052 ~ 60391626 (+) True LOC110521558
XM_036981500.1 mRNA upstream 32892 60301493 ~ 60370189 (+) False LOC110526060
XM_021606664.2 mRNA upstream 32892 60349392 ~ 60370189 (+) False LOC110526060
XM_036981491.1 mRNA upstream 32892 60349392 ~ 60370189 (+) True LOC110526060
XM_036981519.1 mRNA upstream 94840 60305769 ~ 60308241 (+) True LOC110526075
XM_021606732.2 mRNA downstream 69259 60496970 ~ 60501618 (+) False prdm8
XM_036981567.1 mRNA downstream 69259 60496970 ~ 60501618 (+) True prdm8
XM_021606759.2 mRNA downstream 689539 61117250 ~ 61227125 (+) False LOC110526122
XR_002473891.2 mRNA downstream 702395 61130106 ~ 61132005 (+) False LOC110526134
XM_021606789.2 mRNA downstream 914394 61342105 ~ 61401098 (+) False lrrfip2
TU73321 other upstream 461017 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 1077952 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 1702702 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 1737175 58665334 ~ 58665906 (+) True G64315
TU71238 other upstream 1815496 58586858 ~ 58587585 (+) True G64292
TU75047 other downstream 887163 61314874 ~ 61315252 (+) True G67806
TU75188 other downstream 1302054 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 2847252 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 4381878 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 5488024 65915735 ~ 65922285 (+) False LOC110527164

Expression Profile