RNA id: XM_036982519.1


Basic Information

Item Value
RNA id XM_036982519.1
length 3400
RNA type mRNA
GC content 0.47
exon number 17
gene id LOC110526701
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 63225088 ~ 63239237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATATTTTCTATTTTGTTTTTCAGTATGTTTAGGGGGTAAAGGTTGACTGATAGAGGGGTTACATAATACATATTGGTAATCATTTAATTGCGTCATATGAGCAGCCTTTCCATGAGCAGCCTTTTCATGGCTCTCTTTAGAATTCTGGTTATGAAACAACGTGTTACGCAATATCTAAAATGAGCACAGGAAAGAGGAGTATTCATGTTTACATTGAGATTTCATCAAATGGTGCCTTTTACCATTCAGGAAATATATGGAATCGGCTCTAATGAAACATTTTATGCTATGTACAGTATACTGCGTAGCTAAATGACgaaaatgtacatttgctgatATAAAGGCACATTACATTGGATCTGGTTTTATCTACATTTTATCAGCAAAGTACCACGCTGTGCACTTCTTGTCGTTCAGGGACAGTCCTGGTTTGGAGAGAATGGTTGCATGATTGCTATTCCGGACCCAATCCAGAAGTATTGGCATTGTAAAGTAGATTTCCCATTCTCATGCCAGTCTCCTTGTCTGGCCACGGTGCACATGAGGATGGCAGTGCAGGGCTGTGGCAGCTTGACCTGAACCTAGCCAGGCTGCATTTCACCCATCACCCCCTGTTTAGCACAGAGCATGTGTTGGCTCAGAGACTGTATGAGCTCTATGAGCATTATGAAACCCGTGAGATGAAGGGTGCAACTACCTCTCTGCAGGACAAGCTAAGCGGGCTGAAGAAGTCAGAAACAGCCTTGACCACCACTGATGAAACTGCTCCTTGCTCAAAGTTACAGGATCTGAGACAGGAAATACGAAAGACCCATGTAGCACTGAAGATTGAGAAGCAGGCAGACATCTCTCTGGTGAGGAACATTGTTGCTGCTTGGAAGCGCATCAAAACCCTCAGGGCCAAGAACGGCTATGTGAACACCACTGTGAAATTACAGCTGCATAAAGTGAAGGCAAGGATCACTGACAGCACGACAAACCGAACTGGGACAGATGAGCACATGAAAACGAAGCTCTACACAGATGGTGACGTAACGATCAAGCAGCTCTACCTGTGTAGGGAGCTGAAGGAGCATAACAAAGAGGAGATATCCGTCCCTCCAGTTCCAGGACAAGAAGAGGAGATGTCTACTGATTCTGTCAAGCAGAAGGCAGATCAGTTAGATCTAGTTCCTGTTCTTACTATGTGTGGGGTGGTCACTCCAACCTCTAGCTGTCCACCTGATGAGAAGGTTAGAAGATATGAACTGGCCAACCACAAAGTATCAGTGAACATATTCTATAATGGAAAGCATGTGTCTACCTCCGAGCCATCCATGTTCGACAACAGTGACTTCAGAGTTCAAATTCAACAGATGTTCAACATGCAGATTGTACACAGCCCAGAGAACATTATGCTTGAGATTTGTGAGACAGTGAAACAAAAGAGCACTGTTGTGGCCAAAATGTATGTGCCCATACCAGACAGGAACATGCTCTCTAGCAACGCTACAATGGAGAGGTCAGAGTTCAGCAGTGACAGAGCCATCAAGGCCTACTACGCTGGTGTTGGGAGCAATGTCCCATTCAAACTAGAGAAGGAGGATGCTGAGGAGTGCCTCATGACCTCTGGGAGGCTGCTGTATGTTGTCTCCTGGGCTGTGGATGAGAGTGGCTTTCCCATGGCGCCCACTGCCCCACCACACAGACCCAGCTCAACCAGACCCATGGCCAGCGGTCCCAATGCAAGTAGGCTTGAATGGATCAGGGACCTTCAGTTTGACCCCAACCACCCTTCTAACACAGAACTCACAGAACTCCTTAGGGAGGCCtgtgagcagagagacagagccacGGGTCACTTCCGCCTGCATGCCCTGGAGGAGGAGTTTGACTTCACCACTGAGGAGCAGCTGGAGAAGTCCAGTCGCTTTGGTCTCCTGCAGCTGCGGAGCTCTCATGCTGTGGACGTCAGCCCCTCCAAACCCATCCCTCTCCACGACAGAGACATTACTGAAGCAATGTTCACTGATTATGGTGCATTCCCAAGTCTGTCCCTTATGGATGAAGACCCTATCACAATGCAGAGAGCACGCTCTATACACTACATCCAAAAGGCGCTGAATTTGGCAAGAGAAAAACTGTTGAACATCAAGAGGAAGTACAAGTTCTCTGATATAGTCACCGAGTACCACGAGGCAGATACAGTGATGGAGTTCAACTGGGACGTGTTCAGACTTAAGCGACCTCTCCAGCCTCAGCGCGTGAAGAGGAAGATCATTCCTACCTGCTCCCTCTCAGACGGGGACCTGAGGATCCATGTTGCCATCAACAATGCCCAGGGCCTGCCTGTTCGCCAGGAGGCTTTCCTCAAGGAGATCCAGGCAAGAggctcctgctgtggtctgtcgaGCAGCAGCAGACTCAACATGAAAAGCAGCTCAGAAAAGGCTGTCCTACAGATCCTTAGGGGGTGATTATAGCCACGCGGGCCTTTCCAAAGTACAAGACGACATTGTCATCAATGTGTTTGATGAGATGTCCTTTCAAGTCATTGAGGTATTGCAAGCCTCAACCATGAAAGTACAAGCACTATTCAAAGGCCACTTCAAATCGCAGGGTGAACTGGAAATCAACATTCTGTCTGTCCCATCGCCATCCCTCCcttactctcttttttttctttcatctttTATCTCACCTGTGTGAAACCCAGAGCAGTTCTCTGAGAGGCTGTGGAAGCCAGGTGTTCTCTGGCAGACAGTGGCTGGGCTCGGTCACCTTACCCTTCAGATCTCTGCTGCAGCAATCCAAGGTGTATGAGAAACTGACCATCTGTACCCCACCGACCCTACTGGGCTACATGTGGACAGGGGAAGACATGGTCAATGACCAGGGCGTAGAGATACCCGCGAGAAGAGATACCAGTTTCATGAATGTCTTCATCACATTGGATCCAGCCATCTCTCTGAGTGATGACCAGACTCCAAAGGCAAATCATTTTCATGTTTAATACTGTTTCGTTTTAAAGAGGTACTATGTTCTAAAAACCTCTTTGCCTTCAAGTCAAAACACTTAAACTGTTATTTGATTCAGACGTTTGCTGTGGAAGATATTGATCGATAAGATATGGAATATGATTACTCATTAATCAGCATCCATTCTTTTAAAGTGCTTATGTTGAATGTCATGACTACTGTGATTGATAACCAACTGTACAACTGCATCAGAACACACATCCATGGAAATGTACTATTTACCCTTTTCATATTCAGTATGGTGACCAAAAGCCCCTTTGGCTGGTGAGTATCAGTCCAATTTGTATTGCTTAGCCTAAATGATAAGTCATCCTTTTCCATGCACTGCTGCTGCTCCTACAGAATTCTGTGTTTGTATCCGTCTCCGCGTAGTTTTCCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77294 lncRNA upstream 6159 63220026 ~ 63220972 (+) True G69829
TU77207 lncRNA upstream 145245 63081685 ~ 63081886 (+) True G69745
TU77205 lncRNA upstream 150797 63076115 ~ 63076334 (+) True G69743
TU77167 lncRNA upstream 172132 63033351 ~ 63054999 (+) True G69705
TU77151 lncRNA upstream 243410 62983502 ~ 62983721 (+) True G69692
TU77307 lncRNA downstream 9730 63248967 ~ 63249306 (+) True G69835
TU77500 lncRNA downstream 28908 63268145 ~ 63268349 (+) True G70003
TU77503 lncRNA downstream 31671 63270908 ~ 63271209 (+) True G70006
TU77505 lncRNA downstream 32607 63271844 ~ 63272163 (+) True G70008
TU77509 lncRNA downstream 38132 63277369 ~ 63277799 (+) True G70012
XM_021607830.2 mRNA upstream 81587 63075377 ~ 63145544 (+) False LOC110526678
XM_021607839.2 mRNA upstream 81587 63075377 ~ 63145544 (+) False LOC110526678
XM_021607846.2 mRNA upstream 81587 63077206 ~ 63145544 (+) True LOC110526678
XM_036982406.1 mRNA upstream 196510 62984186 ~ 63030621 (+) False ide
XM_021607888.2 mRNA downstream 44090 63283327 ~ 63289901 (+) False LOC110526727
XM_036982611.1 mRNA downstream 84665 63323902 ~ 63471138 (+) False LOC110526770
XM_036982605.1 mRNA downstream 94452 63333689 ~ 63471138 (+) False LOC110526770
XM_021607961.2 mRNA downstream 94452 63333689 ~ 63499450 (+) True LOC110526770
XM_021607970.2 mRNA downstream 326266 63565503 ~ 63598806 (+) False LOC110526778
TU75188 other upstream 1493743 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 1911879 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 3285067 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 3902002 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 4526752 58699296 ~ 58700379 (+) True G64338
TU77508 other downstream 35726 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 1570352 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 2676498 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 2676498 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 3048442 66287679 ~ 66288469 (+) True G73515

Expression Profile