RNA id: XR_002474022.2



Basic Information


Item Value
RNA id XR_002474022.2
length 848
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110526795
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 63620237 ~ 63621429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcgctGTGCTGTTGATGTCTGTGAGGAAGATAGCAGATTATGTAGCAAGTTTATCCTCCGCTACCATGGTGAGCAATGACAGCCAATCAGCCTTAGCTGAGACACTGAGGCTTTGTCGTGCTTGTTGCTGGTTACTTTATGTAATGTACCTATTTTTTTAGGGGGTTGCTCTGGCCCCTGCAGGTGCATGTTATGCCATGGCCTGAAACCAAGGAGGTGGGCTAAGTGCTGACGGAGCTCAGAAAACAGCTACTCTGTCTTTCTCAAACATCTTCAAGGTCTCTGGGGAGGGATAAATGCCCACGAGAAGGTGTTTGCTTTGGGGAGAGAGCTCTGGATCTGCACAGGGTCCACACAGCGGCCGATTCGAGGGGGGTATCTGTACTCGCTGTTCCTTTTTCCTATGCATATACCTCTTTGAGATCTAGCTTTAAAGAGGCATAGGGCATGGGAAAATGGGGCTGCAGAGGTATTTCACCGACCGGACTACCCCTGGTCAACCAGCACAGCCCtaagtactccctgttcccccatCTTGGACCTGAACCAGAGAAACCCAGAAAACAAAACCACAACAAGAAACCCTGAACTCAGTGGAGAGACTGTACCATACCTCGTCACGAGAAACTGGGTTTTACAATGTCCTGAAATATTCTATTGTCATTtcctttattttgtatttttgatgATAATACTATAGTATGTTTCGTCGATGTCCAAGTTGTTGTTTTATTGCCTGCTTTCTATATTGATGTGTTGTCCACCTAGTGGGTGGAATTGTCTGGTGTTGTTCAGTAACAgtctataaaaaaaatgttgggcTGAAGAACCAATTATTGATCTTCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77810 lncRNA upstream 64388 63555609 ~ 63555849 (+) True G70300
TU77794 lncRNA upstream 91171 63524086 ~ 63529066 (+) True G70284
TU77792 lncRNA upstream 99278 63520565 ~ 63520959 (+) True G70282
TU77777 lncRNA upstream 109810 63510052 ~ 63510427 (+) True G70267
TU77533 lncRNA upstream 289020 63330887 ~ 63331217 (+) True G70035
TU77918 lncRNA downstream 6839 63628268 ~ 63628595 (+) True G70399
TU77957 lncRNA downstream 54697 63676126 ~ 63679000 (+) True G70434
TU77961 lncRNA downstream 63924 63685353 ~ 63685565 (+) True G70438
TU77986 lncRNA downstream 107470 63728899 ~ 63733431 (+) True G70462
TU77990 lncRNA downstream 112536 63733965 ~ 63734188 (+) True G70465
XM_021607970.2 mRNA upstream 21431 63565503 ~ 63598806 (+) False LOC110526778
XM_021607977.2 mRNA upstream 21431 63565503 ~ 63598806 (+) True LOC110526778
XM_021607961.2 mRNA upstream 120787 63333689 ~ 63499450 (+) True LOC110526770
XM_036982611.1 mRNA upstream 149099 63323902 ~ 63471138 (+) False LOC110526770
XM_036982605.1 mRNA upstream 149099 63333689 ~ 63471138 (+) False LOC110526770
XR_005052510.1 mRNA downstream 359704 63981133 ~ 63998301 (+) False LOC118965254
XM_021608067.2 mRNA downstream 847094 64468523 ~ 64471084 (+) False LOC110526877
XM_021608072.2 mRNA downstream 847095 64468524 ~ 64471084 (+) True LOC110526877
XM_021608102.2 mRNA downstream 1152486 64773915 ~ 64783202 (+) False LOC110526912
XM_021608095.2 mRNA downstream 1152706 64774135 ~ 64783737 (+) True LOC110526912
TU77508 other upstream 344941 63274963 ~ 63275296 (+) True G70011
TU75188 other upstream 1886849 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 2304985 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 3678173 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 4295108 59324636 ~ 59325129 (+) True G65442
TU79281 other downstream 1188160 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 2294306 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 2294306 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 2666250 66287679 ~ 66288469 (+) True G73515
TU81346 other downstream 2799066 66420495 ~ 66424081 (+) True LOC118965274

Expression Profile