RNA id: TCONS_00026420


Basic Information

Item Value
RNA id TCONS_00026420
length 1886
RNA type mRNA
GC content 0.34
exon number 5
gene id XLOC_013368
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18975539 ~ 18979520 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGGTTAATAACGTGCACCGCTTCTTAACGCGCAGTAAATGTGTAATATAAATGTCCAAAATGTCTTATCCGAGAAACAGTTTACATATTGacaatacattatataaataatagttATCTTATATGAGGAAACTTTGTTCGGGTAGTTCACTCAGTCTAAAGTTAAAGCATTATACTTTAACAAGTATATTAAATAGTGTGTTTATAATGCAGCAGAACTCTGAATCTGATCATTTACAAACAGACTTGCAAAAGACTGGTTCAAGATTTCATGTTCTGGTAGGTTTGACCGGCAGTGTCGCTGCACTCAAGGCGCCTTTGTTGGTTAAACAACTTCTTGAGATTCCTGAGGTTGATGTGCGTGTGGTCACCACAGACCATGCCACTCATTTTTACGATATCAATGAAGTCCCTGTTCGTGTGTACACAGATAAGGATGAGTGGGAGATGTGGACAAAGCGCTCTGACCCAGTTCTTCACATTGAATTAAGACGTTGGGCAGATCTTTTAGTGATCGCTCCACTAGATGCCAACACACTTGGCAAAATCGCTAGTGGTATATGTGACAACCTCCTGACGTGTGTGGTGCGGGCCTGGGACATCAGCCGCCCTTTGCTCTTCTGTCCTGCTATGAACACAGCCATGTGGCAGCATCCAATTACTGCTCAGCAAGTGTCCACAATTAAAGCATTTGGCTACGCTGAGATACCATGCATTGCCAAAAAACTCGTCTGTGGAGATGAAGGTAAAGGTGCCATGGCTGAGGTCTCAACTATTGTTGATACTGTGAAACAATACGTCCAAAGTCATCCCAAGTAAACTCAGACTAAACCTACTCATCATCGATGAGGAGACACAAGGTTATCTAAAcaataaaatctatattttaaaccAAATTTACAAACagactattttaaatatatttgacatTGTAATAGATATCTGAGTGTTTTGcagatattactattattataatgattCAGAGTAagcactttatttttttcatgacagaagaaaaacactaataataaagcaagtcaacaatagtaaatatgaAGAATAGAACAAATAAGTATGGAATACCAATATACAAACTGACAATTGAATGTACATGTATATTGCAACATAATAGGATATATTTCAGTATGATtattaatacagttttttttttctttgtgagtCAGAACAACTTCAGTCTAAAAgttgctgggttgttgtaacccaaaaatctaattcaaatattatttgtcacatacacagtatgatatgcagtgaaatgcttacacaaccacttgtaaccttaaaaaaaaaataataacaataagaatcTAAATTATGATGAAATAGAAGTTATGCAattgaaaataaatgcaaatataaactATTTAAAGACTTAAATTACAGACAGAAACATAGACGAAACATAGACAGGAAGGAGTGTTTTCTATAGATGGGGCAAAAAGAGACATACTCAACCATTGGGGTTAATATTAATAAGTATAtacgtttaataaaaaaaattacccaATTTTTGGTTTCTTCATATTTGACCCAGGATTGGGTCACAACCACCCAGCATTTACTCGCTACTCAGGCACATGAAAATAGATTTCTAATCTAATTCATGAATAATCTAATTCATGAATAGTCTATGCCTTAACTCATTGTtatttcataataaagtaatatttaattCAGTCCATCGCTATTCATGGCTTGTAAGCTCTGCTTTTTCAACAATATCCATGCTCATAAATAAGCTTGACTACAAACATGTTTATTACTCTTAAACTCCATTGCTGATACAACACTGTTAAACCATATTACTGACATAACTTTGTTAAACCACATTAAGTGGAAGTTAAATAAACCCTGTTTCACAAAG

Function

GO:

id name namespace
GO:0015937 coenzyme A biosynthetic process biological_process
GO:0071513 phosphopantothenoylcysteine decarboxylase complex cellular_component
GO:0010181 FMN binding molecular_function
GO:0004633 phosphopantothenoylcysteine decarboxylase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00770 Pantothenate and CoA biosynthesis

ZFIN:

id description
ZDB-GENE-040426-1749 Predicted to enable FMN binding activity and phosphopantothenoylcysteine decarboxylase activity. Predicted to be involved in coenzyme A biosynthetic process. Predicted to be part of phosphopantothenoylcysteine decarboxylase complex. Orthologous to human PPCDC (phosphopantothenoylcysteine decarboxylase).

Ensembl:

ensembl_id ENSDART00000132744

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026960 lncRNA downstream 96815 18876390 ~ 18878724 (-) True XLOC_013366
TCONS_00027291 lncRNA downstream 154169 18815654 ~ 18821370 (-) False XLOC_013359
TCONS_00027290 lncRNA downstream 182274 18787384 ~ 18793265 (-) False XLOC_013363
TCONS_00027289 lncRNA downstream 226134 18744462 ~ 18749405 (-) False XLOC_013362
TCONS_00026409 lncRNA downstream 248507 18713973 ~ 18727032 (-) True XLOC_013361
TCONS_00027292 lncRNA upstream 130527 19110047 ~ 19111916 (-) True XLOC_013371
TCONS_00026439 lncRNA upstream 473094 19452614 ~ 19453739 (-) False XLOC_013375
TCONS_00026441 lncRNA upstream 474634 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00027293 lncRNA upstream 904071 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00027294 lncRNA upstream 1160552 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00026418 mRNA downstream 33441 18931484 ~ 18942098 (-) False XLOC_013367
TCONS_00026419 mRNA downstream 38054 18935081 ~ 18937485 (-) True XLOC_013367
TCONS_00026416 mRNA downstream 100231 18870625 ~ 18875308 (-) False XLOC_013365
TCONS_00026417 mRNA downstream 100618 18871403 ~ 18874921 (-) True XLOC_013365
TCONS_00026413 mRNA downstream 125237 18803539 ~ 18850302 (-) False XLOC_013364
TCONS_00026422 mRNA upstream 15727 18995247 ~ 19004247 (-) False XLOC_013369
TCONS_00026423 mRNA upstream 15727 18995247 ~ 19005919 (-) False XLOC_013369
TCONS_00026424 mRNA upstream 16074 18995594 ~ 19006634 (-) True XLOC_013369
TCONS_00026425 mRNA upstream 65319 19044839 ~ 19095141 (-) False XLOC_013370
TCONS_00026426 mRNA upstream 65353 19044873 ~ 19095170 (-) False XLOC_013370
TCONS_00026414 other downstream 154169 18815654 ~ 18821370 (-) True XLOC_013359
TCONS_00026411 other downstream 182274 18787384 ~ 18793265 (-) True XLOC_013363
TCONS_00026410 other downstream 226134 18744462 ~ 18749405 (-) True XLOC_013362
TCONS_00026408 other downstream 273775 18696207 ~ 18701764 (-) True XLOC_013360
TCONS_00026403 other downstream 397645 18577814 ~ 18577894 (-) True XLOC_013357
TCONS_00026421 other upstream 15727 18995247 ~ 18999255 (-) False XLOC_013369
TCONS_00026429 other upstream 130527 19110047 ~ 19111751 (-) False XLOC_013371
TCONS_00026433 other upstream 395319 19374839 ~ 19374955 (-) True XLOC_013373
TCONS_00026434 other upstream 443491 19423011 ~ 19423128 (-) True XLOC_013374
TCONS_00026436 other upstream 472062 19451582 ~ 19451651 (-) True XLOC_013376

Expression Profile

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