RNA id: TCONS_00026424


Basic Information

Item Value
RNA id TCONS_00026424
length 2427
RNA type mRNA
GC content 0.46
exon number 12
gene id XLOC_013369
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18995247 ~ 19006634 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGTGTCATCAACTGTTGCTGTCAAGCTGTATCAGTGCTGTATCAAATCCTAAAATAGCTTAATGAAATATATTATCAaagatatgcacattaatacttATTCTACTAATGTCATAATTAATTATAGTTAAGCTTAAAGAAACGTACCGGTCGTCGGGCGATGCGATGAGCGctacgtctctctctctctccctcacagCTGGACTGCAGGGAAGGCGCGGATGCTGAGAGAGAGCGGCTTCAGGTCAAGCAGGACGCACCGCAGGACAGGCTCTTCAGCGTGGATCAGCACAAAAACTAATACCTGAAGTCTTTTAAGAGGATTAGATGTACTCTCACCCCACACTCTCATTACTCCTCCAGCCATTTTAGCACAATTATTCTGATCATTTGCGTCTCATTCACAATTCCCAGAAATTGAACGTCGATGTAAAGTGGCTAGAAAAATACAAATCGAAGGCTAACAATTACTTCGAGAAAATAATTTCTCTTTTGTAATTATTGGTAATTATCTTTATGAACTATGGATTACAGATTagtattaaaattgtaaatatattttttattcccgGGGTGATATTAGGCTTATAGGTTTCAGGACATGCAATTTTTTACTCGTTTTCCATCtttacactttttaaaacaaacaaacacaaagtgaGAGAGTGATAGTTTCACACAACTTTTTAGAATCTCTCTCGTTTCCGAGTAGGAACGGATTGGTAGGCTTCTTTTGTTCCCCACCGGTCTGCTTATTACGGTGCGCGCTTGGTGAAGAAGAAGAGAGGATTTGCAGAAATGGATATCTCCTATATTCATTCATAACTGTTCTTCAGCGTGTAAAGAGAACAGCTTGCAAACATGCCCACGGTGGTTCTTATGGACTCGTCGCTGTCCATGACGCGACCGGTGTCAGTGGAGGGCAGTGAAGAGTTTCAGAGGAAGAACCTGGCAGTTCATGGACTAACCATGCTGTTTGAGCACATGGCCACAAACTACAAGCTGGAGTTCACTTCACTTGTGGCCTTTTCCTCGCTTTGGGAGCTAATGGTGCCTTTCACTAGAGACTACAATACATTGCAGGAAGCCTTGAATAACCTTGAAGACTATGATAAAACCTGCCTGGAAGGAGCTTTACAAGGTGTTAGTAATGTAGTACAGCAGGAGTGGGGATCTGCTTGTCCATGCCAGGTGGTGCTGGTCACTGACGGAGCACTGGGCATCGGCCGTGGATCTCTGCGTCACTCTCTGCAAACTGTCAAACAGAGAGGAGAGGACAAGAAATTCCCTCTGCCTTTCCCATTCCCTTCCAAACTCTACATCATGTGCATTGCCAATGCGGAGGAGCTCCAGGCTACAGATGGTATGGATAATTTAGAACAACTGATTAACCTGAACGGTGGAGATGGACAGATATACACTATGGAGGGACCCCTCTGTCTTAAAAGTGTCCAGTCAATGTTCGGTAAGCTGATCGACCAGGCTTACTCTCCTTTCCATGCGGTGCTGCGCTGTGGAAACCTCACCTCTGATGTGCAGGTCTTCCCCAGGCCAGAGCCGGTCATCATCGATGAAGAGGTGGATCCCATGCCCAAAAATGTGCAAACGGACTTGGAGATTGTGGGTTTTATTGAGATTGGAGATATTTCCAGCCCTCCTGTTTTATCTAGGCATTTGGTCCTGCCCATTGCTGTGAACAAAGAGGGAGATGAGATAGGTACGGGCACCACTGATGACACAGAGGAAGACACCTCCACAAATCAGATGGCTGGAAAAAGCCCAAACTTCTGTGTTCTTCTACACGGCAGCCTGAAGGTGGAGGGCATGGTGGCACTTGTACAGCTAGGGCCGGACTGGTACGGCATGCTTTATTCCCAGGCAGACAGTAAAAAGAAGTCCAACCTCATGATGTCTCTGTTTGATCCCGGCTCCGAACCTCTGCCCTGGCTAGGCAGAATGTCACAGCTTGGTCCTGCTTCAGATGCAGCTGAAAATCCCTATGGTGAAGATGACAGTAAAAGTCCTTTTCCCATCCAGCCGAAACACAAGAGGAGCTATGCTCAGAATGTGACTGTCTGGATTAAAGCCAGTGGACTGCAGACAGATGTACAGAAAATTCTCCGCAATGCAAGAAAACTACCTGAAAAAACACAAACCTTCTATAAGGAACTAAATCGTCTTCGGAAAGCTGCTCTGGCATTTGGTTTCTGGGAGCTCCTGAAGAGCATGGCTGAGCTTCTGGAAAGGGAATGTACTCTTCTGCCTGACTCTGCCCACCCCGATGCCGCCTTCCAGCTGTCACACGCAGCCCAGCAGCTTAAACTTGCCAGCAGCATAGACTCCAAATACGCCGCCTTCGAACACAACATCACCCCAATGCTCACTGACTTCTCAGGCGGAGGTGGCGACAGAATTTAGAGGATGGAG

Function

GO:

id name namespace
GO:0034472 snRNA 3'-end processing biological_process
GO:0032039 integrator complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5804 Predicted to be involved in snRNA 3'-end processing. Predicted to be part of integrator complex. Orthologous to human INTS14 (integrator complex subunit 14).

Ensembl:

ensembl_id ENSDART00000060731

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026960 lncRNA downstream 116870 18876390 ~ 18878724 (-) True XLOC_013366
TCONS_00027291 lncRNA downstream 174224 18815654 ~ 18821370 (-) False XLOC_013359
TCONS_00027290 lncRNA downstream 202329 18787384 ~ 18793265 (-) False XLOC_013363
TCONS_00027289 lncRNA downstream 246189 18744462 ~ 18749405 (-) False XLOC_013362
TCONS_00026409 lncRNA downstream 268562 18713973 ~ 18727032 (-) True XLOC_013361
TCONS_00027292 lncRNA upstream 103413 19110047 ~ 19111916 (-) True XLOC_013371
TCONS_00026439 lncRNA upstream 445980 19452614 ~ 19453739 (-) False XLOC_013375
TCONS_00026441 lncRNA upstream 447520 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00027293 lncRNA upstream 876957 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00027294 lncRNA upstream 1133438 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00026420 mRNA downstream 16074 18975539 ~ 18979520 (-) True XLOC_013368
TCONS_00026418 mRNA downstream 53496 18931484 ~ 18942098 (-) False XLOC_013367
TCONS_00026419 mRNA downstream 58109 18935081 ~ 18937485 (-) True XLOC_013367
TCONS_00026416 mRNA downstream 120286 18870625 ~ 18875308 (-) False XLOC_013365
TCONS_00026425 mRNA upstream 38205 19044839 ~ 19095141 (-) False XLOC_013370
TCONS_00026426 mRNA upstream 38239 19044873 ~ 19095170 (-) False XLOC_013370
TCONS_00026428 mRNA upstream 38492 19045126 ~ 19103929 (-) False XLOC_013370
TCONS_00026427 mRNA upstream 38492 19045126 ~ 19103929 (-) True XLOC_013370
TCONS_00026430 mRNA upstream 136803 19143437 ~ 19350792 (-) False XLOC_013372
TCONS_00026414 other downstream 174224 18815654 ~ 18821370 (-) True XLOC_013359
TCONS_00026411 other downstream 202329 18787384 ~ 18793265 (-) True XLOC_013363
TCONS_00026410 other downstream 246189 18744462 ~ 18749405 (-) True XLOC_013362
TCONS_00026408 other downstream 293830 18696207 ~ 18701764 (-) True XLOC_013360
TCONS_00026403 other downstream 417700 18577814 ~ 18577894 (-) True XLOC_013357
TCONS_00026429 other upstream 103413 19110047 ~ 19111751 (-) False XLOC_013371
TCONS_00026433 other upstream 368205 19374839 ~ 19374955 (-) True XLOC_013373
TCONS_00026434 other upstream 416377 19423011 ~ 19423128 (-) True XLOC_013374
TCONS_00026436 other upstream 444948 19451582 ~ 19451651 (-) True XLOC_013376
TCONS_00026437 other upstream 445236 19451870 ~ 19451937 (-) True XLOC_013377

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_04774039_04780331.mRNA True 1898 mRNA 0.46 10 CI01000013 4774039 ~ 4780762 (+)