RNA id: TU75096



Basic Information


Item Value
RNA id TU75096
length 632
lncRNA type antisense_over
GC content 0.51
exon number 4
gene id G67847
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61409429 ~ 61410616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTATTATTCACCTCAATTCCAAAATTGCAGTTTCTCTTTTTTACTACTACTGATTCTACACACCAACCAATCCACTAAAGAAAAGAAAGAGAATTCCATACACCCAGTTTAGCTTATtggcacatactgtatgttgtgttaAATACCTAGTAGTATAATATCCTGttaaaaacaatacaaatgaGAAGACATTCAGCATGGAGGACTGCCGAGCTAACAGCACCTGTGTGAAGTACGTGCGTGAGGAGTTGGAGCCCAGGAGTTTGCTCTCTATCTGTCTTTGAACGCTCTCGATGATACAGTCTTCGTGGAGGAAGTGCACCTCGTGTTTGGTAGGGTGGACATTCACGTCGATGTTATGAGGGGCAATCTCCAGGCTGAGATATAGAAATGGGTGAGAGTTCTTGGGAAGGTATGCAGCATAAACGGTCTCAATGGCTTTTTTTAAGGCACTCGATTCAACCAGACGATGATTGATGAAGAGGATGAGGATGCACTTCTTCACTGAGTAGTTGGCGTTGGAGATGTGGCCCTTCAGCTTATAGGCAAGCTTCTGATCCTCACAGCCCACTTCAATCAGCTCcCTGCTGACTGTATTGCCGAACACCACACGGATATTATCCAGTATGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU75066 lncRNA upstream 6079 61365662 ~ 61403350 (+) True G67818
TU75076 lncRNA upstream 72471 61336626 ~ 61336958 (+) True G67828
TU75074 lncRNA upstream 82281 61326786 ~ 61327148 (+) True G67826
TU75069 lncRNA upstream 87924 61321213 ~ 61321505 (+) True G67821
TU75053 lncRNA upstream 89562 61319593 ~ 61319867 (+) True G67812
TU75104 lncRNA downstream 6514 61417130 ~ 61417727 (+) True G67855
TU75106 lncRNA downstream 12659 61423275 ~ 61428564 (+) True G67856
TU75154 lncRNA downstream 101019 61511635 ~ 61511835 (+) True G67897
TU75120 lncRNA downstream 130905 61541521 ~ 61544200 (+) False G67870
TU75122 lncRNA downstream 131081 61541697 ~ 61544200 (+) True G67870
XM_021606780.2 mRNA upstream 7622 61342204 ~ 61401807 (+) False lrrfip2
XM_021606789.2 mRNA upstream 8331 61342105 ~ 61401098 (+) False lrrfip2
XM_021606873.2 mRNA upstream 8331 61342105 ~ 61401098 (+) False lrrfip2
XM_021606839.2 mRNA upstream 8331 61342203 ~ 61401098 (+) False lrrfip2
XM_021606796.2 mRNA upstream 8331 61342204 ~ 61401098 (+) False lrrfip2
XM_021606975.2 mRNA downstream 26991 61437607 ~ 61488427 (+) False LOC110526206
XM_036981774.1 mRNA downstream 26991 61437607 ~ 61488427 (+) False LOC110526206
XM_021606984.2 mRNA downstream 27363 61437979 ~ 61488427 (+) True LOC110526206
XM_021606997.2 mRNA downstream 90398 61501014 ~ 61505305 (+) True LOC110526212
XM_021607008.2 mRNA downstream 107337 61517953 ~ 61540937 (+) False herc4
TU75047 other upstream 94177 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 1467365 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 2084300 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 2709050 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 2743523 58665334 ~ 58665906 (+) True G64315
TU75188 other downstream 319149 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 1864347 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 3398973 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 4505119 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 4505119 65915735 ~ 65922285 (+) True LOC110527164

Expression Profile