RNA id: XM_021606975.2


Basic Information

Item Value
RNA id XM_021606975.2
length 5812
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110526206
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61437607 ~ 61488427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCATGGGTATGCTCAAAATGGCTGTTAGTCCTGACTTGAATGGGCACTTTCGTTCTatggattctatttctatggataATATTTATTTTCGGGTGGTCAGTGAATAGCTAAAGGCCTTTCGCAAATTTCAAAATACAATCGTGGGAAATacgtttggaaagcaaatgcctACTGCCCGAAAGAGAAGACTAATTTGTCAGTAGAAGCTAGCATTTTTTCCCTCAACAACGAACAGCACTGTTTTTCAAAGTAGTCAGGCGCTATCTTGAGACAATCACCTGTACAGTGAGAACCCTAGGCTACGCATATTCATGCTATCCATcttcatcattggGAATCAGTATGGCACACCGCTCTCAGTGTTCCTCAGCCGGGGATAATCGCCTGGACCCCAACTATGTGCCTCCCCACTACCGCGAGGAGTACCGTCTGGCCATTGACGCACTTGTGGAGGATGACCTGGAGGGCTATTATGAATTCCTCCAGAGTGCGGATGTGGTGGACTTCCTTTCCAGACAGGAAATTGAGCACATTAAGTGCACAGTGAAAGTTCCCTACCAGAACACTCAGCCTGAGCTCCCATATGTGGAGTCTGGGGGAGACGGCTCTTCAGACACATACTGGCCCGTCCACTCTGACTTGGATGCACCCGGACTTGACCTTGGCTGGCCCGAACAGCATCGCTTCATAGGCCCCACTGATGTCACCACACTGGTTAACCCCTCTGAGCCAGATATGCCAAGTATCAAGGTGCAGGCTCGTCGACTTATCAAGAATGCTCAACAAGTGATCGCTGTGGTAATGGACACTTTTACAGATGTGGACATCTTTGCTGATATTCTGGATGCTGCCATGCGAAATGTTGCCGTGTATATCATTCTGGATGAACAGAATGCACACCACTTCACTAGCATGGCTTCCAACTGCCGGGTCAATCTGGAAAACATTCAATTCATGCGTGTCAGAACTGTGTCAGGGGTCACCTATCACTGTCGCTCTGGGAAGACCTTCAAGGGTCAGATGATGGATCGCTTCTTGCTGACAGACTGCAGGGCAGTCCTGAGTGGAAACTATAGCTTCATGTGGTCTTTTGAGAAGCTTCACCGTTGCATGGCTCACCTCTTCCTTGGACAGCTTGTGACTACTTTTGATGAGGAGTTCCGGATCCTGTTTGCACAGTCCCAACCTTTGGTACTGGAAAATGTCCTTGTTCCAATGCCACACTACAGCAGTTTATCTGACAGCCAATACAGCAGTGATCGGACACTATTGTTCAGAGATCCCAGAAAGTTCCTCCCCATAGACAGCTCTCGTCCTGTAGAATGGGCTAGACATTCCTCTGATGACCGCATGGATATGGTTCAGAATATGATGCCTCCTGGAAGGTGTGAGCCCATCCACAGTTCACTAGATCAGGGTCCACTAGATATGTACAGCAACAAGTACTCCTCCCAGCaatttaaactggagcagcagtctTTTATGGCACAAGGTCACTCCATGATCCAGTCAAACACAATGGAGTTTGCTGGCTCTAAAAGGCACAGTTATGCAGAGGGCACTTATGCCGGACATTCCTCCTCTCAATTCATGCAGCACCAAGCCATTCACAGCAGTGAGGGGGATACGGCAACCCAGAACAGGAAGATACATAGGGAACAGCATCACTATCAGAGAACAGGGCTAGAACCAAGTTATAGCGGCTACGATCAATTCAGGGACCAAGCGTACCCTCTGATGGATCAGTATTCTGAGTCTGGGTACCCACATGGAATAGCGATAGAGCCACCAGACAACTATGACCCTGTACTGAATTATTTGTCATCATCAAACCTTGCTGTGGAGCTGGGACATGGCTCAAACAAATTATCAAGTCCAGGAGAAGGTCCCTTTAGTCAGTCAAACCCCAAAAGACTGAGAACGGGCCAGCCTCATGCCTGTCAGACCTCCCCAACACAACAAAACCCATTTGAACAGAGATCATTTTTTGTCAGGTCTGGTTCGGACTGTAAAACACAGGATCACAGTGCAAAGCAGGGGATGCGAGATTGGAGGATCAGCTCATACCTCAGTGCATTTGATGATGCAGGAGAGGAAGAGATTCCACGGCCTATGGGAAATGACCCCTTTCAAGAGCCCCTTAATCCAACACAAGGCAAATTATTTGCTCCACTGGTATCAGATCCCAGGTTTAGTGCCAAAGAGTTACCCAAGATTCCAGGGCTCAGATTTAACAAGCCCACCTGCCCAGAACACTCAAGAACACTAGAAATTATTGTTAGCTTAGATGCCCAAACAACACTAACACCACCTTCGGAGTCGTCATCAACCACTGAAGGTGACAAATCAGAGGAGATGGATGTAAAAGAGCCCAAAAGAGAAGAGTCATTCCGTAGGAGGTTCAATCCTGCTATCCAAAGGACCTCGAGACTAAGATCCTCACTAATCTTCAGCTCACAACTCGAACAGCATATCTCACAGGAACAGAAATGTAACTCTGGCCAACACTGTGAGGAAACTGCCAATGAGGAAGATGACCCATCTAGATTATCCTTGACCGCTCAGGTTTTGGGAAAAAGAAGATCCATTACAAGAGAACCTTTTGAATGGAGACTTAAGTCAGCGATAGTTGATAATTCAACCATTGAGTCTTTGAAATCTGAGGACATCACTACTGATTCGGGTGATAAGGAATTGACAAAGTATCTTCCTGTGAGCACTGACAAGGTTTCTTCAATGGAACAACCTAATTCTGCCCATGAAGAACAAACCAAAACGGTAGAATCTGCACACCCATCCAAACCTGCTCAAGTTGAGAAACCCAAAACCATACAATCAGCACACCAGGCATCTTCATTGAGCAATAAATCCTATATAGATATGAATGATCCAGACAGtaggttatttttttttaaagagttggCTGCCAAACGAAAAGCTGCAAAGGCTGCAGAGTCTGAGAGCAGCGCTGAAAAAGCTCCTGTAAAACCAGTGACTCCATTTGCCTTGAAAATTAAGGAACCAGTCACAAGGATAGAACCTAACCTTCCAATAGCCACACTAAATCCAGCACATACTTCAACCAATAAGCCAGCTCCAGCAGATACTTCAACCAATAAGCCAGCTCCATCAACAGAGGCACCTCCTAATCCATCAGATACTTTCACCACAAAGCCAACAACATCGACAGAAGCCCCACTTTATCCAGCAGATACTTCAATAAAAAAGACAGCTACATCAACAGAAGCATCATCAGAAACACTGGAGACTTCACCAGTGTTACAGGAGAACAAAACATCCATGGCAAAATATGGCTCCTTATTTGATGTCAAAGAACACCATTCTAAAAATAAAGAACAGCAAGACCTTCAACTTCCcaaaagtgactccaaaacaTTCCTCAGGGATAAATTATCTTGTGTCGATGGCCTACTTAGAGTCTCTACTGATACTGAGAAGATAGAGCTGAAGAACAGCCGGAACCAAAGTGTGTCTAAAGTTAACCCTAGAGATACAAGTACATTTCTTAAGAGCACCTCAAATCAGTGTTCCTTTAACATCTCCCCAAAGGATTTCAGTTTATATAAACTATCTCCAAAGAAACCAAAGTCATTCAATCCTGCTTCAAATGAGCTAAACCCATCTCTTCCACTCACACTAACAGAAGCTAGCTCATCTTCATATCCGACACCAAAAGGTTTAAGCTCAACTAGTCTCACTTCATCACCAAATGCAGCAAAGGAGTTGAGCTCAGCCCTCACCCCCATCCTTAAGGAGCCCAGTTCATCTATCCCCATGTCAAAGCAGCCATTATCATCCTCTAAACCTATCACAGTAGAGTCCAACATACTTCTGAGCCCCACCCAATCTGAGCCAGGTGTGTCTCATAAGCAGGACAAAACAGATTCCAAGGAATCTCTCAGCCCTATCCCAATGCAATCTTGCACATCCTCAATCCCTGCAACAGAACTTAGCCCTCCGCCAAACCCTACCCAAACACAATCTAGTTTCTTACCCAAGTCCACCTTAGTTGGGTCAATTTCATCAACACCAATGGAATCTAACACTTCTCCCAAACCCTCCACAAAGGAGTCATTGTCTACAATTGCCACAACTGAGTTGAGGTCATCCTCTCCTAAGACCAACCCAATAAAATCCTATTCCTCCCCTTGTCCTGGCCAACATGAGTCGGTTTTGTCACTCAAACATTCCAAAACAGCATGCAACTCCTCTCCAAAGCCCGCTACAGTGTCCAATGACTCTTACAACTCTTCACCTCCATCTTCAAAGCATGTCATGGAAGAAACCAACAAATCTCCCATCCTCACACCAACAAAATCTAGCTCTCTTCCTGAGCCTACCCCAACAGAATCTAGTGCTTCAACCAATCCAACTCCAAGAGAACTCAACCCTCTTCCTAGCACCACCCCAACGGAACCAAGTGCATCTACTGGCCTGACCCTAACAGAATCAAGTGCATCTTCTAACCCAACCCCAACAAAATCATACTCCTCCCTTACATGTGGGTCAGGTGGATCAGTTGTGTGTCCCAAGCCTGGCCAAACAAAGTCCAGAACTTCTCCAAACCTCACCCCAAAAGAATCTTGTTCCTCTCCTAATCATACCCTAACTGAACCTACCTCACCATTCAACCCTGTCCTTGTGGAATCCGTCCCATCAAGCAACTCAAACCCAACTGAATCCACTGCCTCTCACGTCACTGCCCCAGCTCCACCTGTCGTTGTGGATAACAGTAAGGAGGGCAAACCAAGTAAACTTAACAAGGAGCAAAAAGTGGGAAGTTCTGCAGCTTATAAAGGTGAGAAGATAGCAGGTGATCCTGAAACAAAGAGCAAAACTGCTCCTGGGGAATCTGCCTCCCATGGATCGCAGAGTCCTGATGAGACCAAAGAGAATAACAGCACTATGAAACCAGAGAGCACAACAGATCAAAGCAATCCCATACCACCCCCAGTGAAGCAACCTAAAGTAAGCCAGTCCCACTACCATTTATCTACTGCCAATGTACTCTCTAGCAGCAACCTAAGAGATGACACAAAGCTCCTATTAGAGCAGATTTCTGCTAACAGCCAGAGCAGGACAGAACTCACTAAAGAATCTGCTGTCACTGATGATGCCAAACAGGATGAGGCTGACCGGGGTGTTAGTGGTAAGGAGGATGCATCAGCCCGACGACAGATCGGAGGCCCGGCTAGAACTTCTCAGGAGAGGGAGAAGCTTCTTCAGAGAATCGATAGCATGCGGAAGGGGAGGAAAGTCTACAGCCGCTTTGAGATGGCGCCTTAACCAGGGATCGGAAGGATGAGTGAGTACGGAGAAAGACCACATTTTCCTCTAGAACTTGTCCTGTAACTATGCCCATTCCCCAAAAGTCTAAAACCACAGATCGGAGAGGGATCACTAGTTAACTAACATAAATATTATTCTCAGGTTTCTATATTAGAGGGTTTCTCCGAATGGACTATATGCATGTAAAGCTTTAAGGATTTTGGGAACAAAAACTTGACTAAGTTTACCAACATGGATTGCTGTGTAAATCTACAGTGTGGACAATGGACCTCTGCTGTCTACAAAGGGGAACTGAAAAATCCAATCCCATCAGCTAAATGCACAACTAAATGTGCAATATATTTgaaaatgattgtgttcctagacACACTGGACGCACTGGTGTTGTTGACTGCAATGTAATATCTGTCACTCTCTGGGTTGTTTAATTATTATCTGTTTGAGGATCTGTTTTATATACTAACAATAATTTCCAAATAATACAATTAGAATCACCATAGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75106 lncRNA upstream 9043 61423275 ~ 61428564 (+) True G67856
TU75104 lncRNA upstream 19880 61417130 ~ 61417727 (+) True G67855
TU75096 lncRNA upstream 26991 61409429 ~ 61410616 (+) True G67847
TU75066 lncRNA upstream 34257 61365662 ~ 61403350 (+) True G67818
TU75076 lncRNA upstream 100649 61336626 ~ 61336958 (+) True G67828
TU75154 lncRNA downstream 23208 61511635 ~ 61511835 (+) True G67897
TU75120 lncRNA downstream 53094 61541521 ~ 61544200 (+) False G67870
TU75122 lncRNA downstream 53270 61541697 ~ 61544200 (+) True G67870
TU75164 lncRNA downstream 82025 61570452 ~ 61571716 (+) True LOC110526250
TU75179 lncRNA downstream 96037 61584464 ~ 61584663 (+) True G67921
XM_021606780.2 mRNA upstream 35800 61342204 ~ 61401807 (+) False lrrfip2
XM_021606789.2 mRNA upstream 36509 61342105 ~ 61401098 (+) False lrrfip2
XM_021606873.2 mRNA upstream 36509 61342105 ~ 61401098 (+) False lrrfip2
XM_021606839.2 mRNA upstream 36509 61342203 ~ 61401098 (+) False lrrfip2
XM_021606796.2 mRNA upstream 36509 61342204 ~ 61401098 (+) False lrrfip2
XM_021606997.2 mRNA downstream 12587 61501014 ~ 61505305 (+) True LOC110526212
XM_021607008.2 mRNA downstream 29526 61517953 ~ 61540937 (+) False herc4
XM_021607015.2 mRNA downstream 29931 61518358 ~ 61540937 (+) True herc4
XM_021607034.2 mRNA downstream 60754 61549181 ~ 61561338 (+) True LOC110526236
XM_021607058.2 mRNA downstream 73185 61561612 ~ 61571769 (+) False LOC110526250
TU75047 other upstream 122355 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 1495543 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 2112478 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 2737228 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 2771701 58665334 ~ 58665906 (+) True G64315
TU75188 other downstream 241338 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 1786536 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 3321162 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 4427308 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 4427308 65915735 ~ 65922285 (+) True LOC110527164

Expression Profile