RNA id: XM_021607015.2


Basic Information

Item Value
RNA id XM_021607015.2
length 4375
RNA type mRNA
GC content 0.49
exon number 25
gene id herc4
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61517953 ~ 61540937 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGATTAACAGCCAGTTAGAACGCAGGCACTGCCGTGCTGCACGCGGACAACTGAACGGTGGATCGCTGTAGCTagatggctagctaacgttaactagctaaaaATGTTAACTAACTAGCTGACTTGTGTCGTGAAATAATAGTACAGCCCTTATAATTGGAGGCATCATAATGTTCCCTTTTTAGATGATTCCCCAGTCACAGATGGCCCAAGTGGTGTACACAACTTGATATCAGGACTTCTTTGCCACAACGGACTGTAATCCTGTTGACCTGGTCCACACCAGGAGTGGGGCTAGAGGGGGGGCGGTGGCAATGCTGTGTTGGGGAAATGCTTCCTTCGGTCAGCTAGGTTTGGGCGGGATCGATGAGGAGATTGTGGTGGAGCCCCGGAAATGTGATTTCTTTCATGGGAAGCAGGTGTGTGATATCGGATGTGGCCGACGGCACACCACATTTCTACTGGGAGACGGGACTGTGTACACCTGTGGCTGCAATGACATTGGGCAGCTGGGGCACGAGAAGTCTCGAAAGAAACCAGAGCAGGTTGTGGCACTAGATGCACAGAACATTGTGGCAGTGTCATGTGGGGAGGCCCATACTCTCGCACTGAATGACAAAGGACAAGTGTTTGCATGGGGCTTGGCCACAGATGGACAGCTGGGCCTTGCAAACTTCGAAGAATGTGTACGTGTGCCCAGaaacATCAAGAGTTTATCAGATGTAGAAATTGCTCAGGTAGCCTGTGGATATCGGCACTCCCATGCTCTGTCTAGAGGAGGCCAAGTCTATTCATGGGGACAAAACCGATACGGACAACTAGGGCTGGGAGTAGCTGGACAAGGCATCTCTACTCCCCAAGTCATCCAGTCTTTACAGGGGATTCCCTTCATCCAGATCTCAGCAGGGGGTGCTCACAGCTTTGCCCTCACATTCTCAGGGGCCGTCTTTGGCTGGGGGCGCAACAAGTTTGGGCAACTCGGCCTCAATGACAACAATGATCGGTATTATCCAGCCCAGCTCAAGTCCCTCAGGTCACAGAGGGTTATCTACATCTGCTGTGGGGAGGACCACACTGCCGCACTTACAAAGGAAGGAGGTGTGTTTACATTTGGAGCAGGAGGGTATGGCCAGCTTGGACATAACACTACAAACCATGAGATCAACCCCAGGAAGGTGTTTGAGCTCATGGGAAATGTAGTCACACAGATATCCTGTGGAAGACAGCACACTCTGGCCTTCATCCCCTCCTCTGGAAAGATGGATTCATTTGGGCTGGGAGGGAACGGGCAGCTCGGTACACGCTCCACATCCAACAGGAACAGCCCTGCCCCAGTCAAAGGCCCCTGGGTGGCCTACAATGGCCCGACGCCCACAATCGCAGACATGGAGCAGGGCTGCTGTGTTAAGAGGATCTATGCTGGAGGGGACCAGAGCTTTGCCCACTGTTACACTCCCCAGAACCCTCTGGTGCCTGACGACATCAGAATACCAGATCCCAGAAGACACATATGCACCTTATCTGCTGATCTCACTCAGAGATGGCTGAACCATTATACACACGGAAGACTCCCACAAGAGATTTCCAACGAGATCGATCTTGTGTTTTCCTCTGCAAGTTGCCTCAATGGAAGCTTTCTGGCTGGCAGCCATCCAGATCACTACAACACGAGCAGTAAATGCTCAGGGGTGGACATGAACATGGCTCGCCTCTTGTTTCACAGAGTCGTTCAACATGACTATCCAGAAATTGCACAGCAGATTGCAGCCAGTCTGGAAAAGAACCTGATTCCCAGACTAAGCAGCTCCCCTCCAGACATCGAGGCCCTGAGACTCtacctcaccctgccagagtgtCCTCTCTTCAGCGACCCAAACACATACGTGACTCTGGCCATCCCTTTTGCCAAGGCATTCATCAGTCTGAAAGAGGCTCCACTGAAGGTGCTTGGCAACTGGTGGTCTCAATTCGAAGCCCCAGTCTTCCAGAGGCTTGTGGAGCTGTATAAGGTGGTGGTGGTTTACCTGCTGAAGATGCACAAGGTGGGAGTCCCCCACTCAGAGCAGAGGGTCTTCACCTGCTTCCTGGACACGGCACTCAAGCTTCTGGAGATCCTGCACGCTGTGAACGAAAGAGCCGGACATATCATACAGTACGACAAATTCTACATTCACGAGTTGGATGACCTGATAGACATCCGAAACGACTACATCACATGGATTCAACAGCAGATGTACTCTATGGCTCATGACAGTGCGGTCACCCTCTGTAAGTACCCCTTCGTGTTTGATGCCCAGGCAAAGACCACCCTGCTTCAAACTGATGCTGTTATTCAAATGCAGATGGCAGTGGACCAGGCACAGCGGCAGAACTTCAGCTCCATGTTCCTTCCGGTGGTGGAGTCTGTTAACCCCTGCCTCATCCTCATTGTGAGGAGGGAGAACATCGTCGGGGACACCATGGAGGTCCTCAGGAAGTCCAAGAACGTCGACTACAAGAAACCTCTGAAGGTGATCTTTGTTGGAGAAGAGGCGGTCGATGCAGGGGGTGTGCGGAAGGAGTTCTTCCTTCTCATCATGAGAGAGCTCCTGGACCCCAAATACGGCATGTTCCGATACTACGAGGAGTCCAGGCTGATCTGGTTTGCAAACAAGACGTTTGAGGACATTGACCTGTTCCACCTCATCGGGGTCATCTGTGGGCTGGCCATCTACAACCTCACCATCGTGGACCTCCACTTCCCAGTGGCCCTGTACAAGAAGCTGCTGAAGAGGAACCCCACGTTGGATGATCTTAAGGAGCTGATGCCTGATGTGGGGAGGAGTCTGCAGCAGTTACTAGACTACACAGAGGATGATGTTGAAGACACATTCTGCTTGAACTTCACCGTTACAGTGGAAAACTTTGGCGCCACAGAGGTCTTAGAACTGGTTCCAAATGGCATGGATATCTGTGTTGACAACTCAAACAGGCCTGAGTTTGTCTCTGCATACGTGGACTACATCTTCAATAAATCAGTGGCTGCGCTTTTCGAGTCCTTTTTCGCAGGCTTCCACAAAGTGTGTGGTGGCAAAGTCCTGGAGCTGTTCCAGCCCAACGAACTGCAGGCCATGGTCATTGGCAACACCAACTACGATTGGAAAGAGCTTGAAAAGAGCACTGAGTATAAAGGAGAGTATTGGGCTGAAAATCCAACCATTAAGTTCTTCTGGGAGGTGTTCCATGATCTCTCTTTGGAGAAGAAGAAGCTCTTTCTCTTGTTTCTCACAGGAAGTGACCGCATTCCCATCCTGGGCATGAAAAGCCTGAAGCTGGTGATCCAACCCACGGGAGgcggagaacactacctgcccgttGCACACACCTGCTTCAACCTATTGGACCTGCCCAAATACAGCAGCCGGGAGACGCTCCAAAACAAGCTTCTCCAAGCCATAGATCACAATCAAGGTTTCAACCTGGCCTAACGAATGGCACACAGACAATGCCTAGCTCCACCCAGACTGTCACATGCACACGTCTTTGCCCCGTCAACTGACTCGATTCCTGCTTTAAGACTGCAGCACTGTCACTGGCGTGAAATGGAACAGACTAAGCAGCATTTGCAGGTGGGCAAATGGTTATGCAAGAGGCTTGAGGGCTTTCTAATTCAAGGCCAGTCTTTGCTTTGATATTTCAGCATCATTTACAGTTTCACACGTCACAATATTGAAGACCCAGTTGAGTTCAAATTCAATTCATATTGTTTGATATTTCTCTTGTAGATTTAGCTTTTACCCGTGTTTGGATATAAACCTGTCTAAATAGGCCAAAGTTCTGGTATAAAATCTTTGAGCTCAGCTGGCACAAGATAGCACTGTTCATGAATTAAATGAATCTTCTACTTTGGCAATTTCTACCATGAATAGAAATGAATCTACCATGGTAAAAACATGGTATGAATGTGAGCATTTGATGTTGCGTGGAAGTTCTTGGCTGTAAGCCTTAAAACTagacaaataaaaaatgaaacattACAGCCATTGGTATTGTGTGTATGACCAAGTGTAAATGAATTTTGGCTTCAACTGTTAGAATGCTGCTCTAAAACATTGCATTTTTGTGGAAATTATAGGCTAGTACCAACATGACTTTTGTTTATCAATATAATTCCTCTAAAATGTGTATTGCGATAACACTTCGGTGCTTTATAATTACTTCACAAAAACTACACTAAACTGTAGATAACGCTCACGTTATACATCACTTAATGGATTTCTATTCCATGTGTATGTGGCATTGGGGAAAGTAtgattgaagaaaaaaaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaatatcccagacattttccatacgca

Function

GO: NA

KEGG:

id description
K10615 HERC4; E3 ubiquitin-protein ligase HERC4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75154 lncRNA upstream 6523 61511635 ~ 61511835 (+) True G67897
TU75106 lncRNA upstream 89794 61423275 ~ 61428564 (+) True G67856
TU75104 lncRNA upstream 100631 61417130 ~ 61417727 (+) True G67855
TU75096 lncRNA upstream 107742 61409429 ~ 61410616 (+) True G67847
TU75066 lncRNA upstream 115008 61365662 ~ 61403350 (+) True G67818
TU75120 lncRNA downstream 584 61541521 ~ 61544200 (+) False G67870
TU75122 lncRNA downstream 760 61541697 ~ 61544200 (+) True G67870
TU75164 lncRNA downstream 29515 61570452 ~ 61571716 (+) True LOC110526250
TU75179 lncRNA downstream 43527 61584464 ~ 61584663 (+) True G67921
TU75196 lncRNA downstream 52640 61593577 ~ 61593781 (+) True G67938
XM_021606997.2 mRNA upstream 13053 61501014 ~ 61505305 (+) True LOC110526212
XM_021606975.2 mRNA upstream 29931 61437607 ~ 61488427 (+) False LOC110526206
XM_036981774.1 mRNA upstream 29931 61437607 ~ 61488427 (+) False LOC110526206
XM_021606984.2 mRNA upstream 29931 61437979 ~ 61488427 (+) True LOC110526206
XM_021606924.2 mRNA upstream 117260 61342211 ~ 61401098 (+) True lrrfip2
XM_021607034.2 mRNA downstream 8244 61549181 ~ 61561338 (+) True LOC110526236
XM_021607058.2 mRNA downstream 20675 61561612 ~ 61571769 (+) False LOC110526250
XM_021607066.2 mRNA downstream 20678 61561615 ~ 61571769 (+) False LOC110526250
XM_021607077.2 mRNA downstream 31864 61572801 ~ 61623278 (+) False mypn
XM_036981823.1 mRNA downstream 32663 61573600 ~ 61623278 (+) False mypn
TU75047 other upstream 203106 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 1576294 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 2193229 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 2817979 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 2852452 58665334 ~ 58665906 (+) True G64315
TU75188 other downstream 188828 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 1734026 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 3268652 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 4374798 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 4374798 65915735 ~ 65922285 (+) True LOC110527164

Expression Profile