RNA id: XM_021607077.2


Basic Information

Item Value
RNA id XM_021607077.2
length 6916
RNA type mRNA
GC content 0.52
exon number 22
gene id mypn
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61572801 ~ 61623278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAAATGTTATTACTTTTACTGGTGACAGGTTGCCCTAGCTACTCGCCTCCACATGTCCCAGTAAACTCCAAGGTTAACTCTGTTCAAGTAATTGGGAAGCCGGCCGGGGAAGCTGCCTCTTGTGTTCACATTTTCCCAGGTGGCCACCACCAACGGAAGACCAGAATCGCCTCTCTTTGAGCAAAGGTGCGCTCCGAGGATTACCACAAGCTCCCGCTGGGGTTTATTTGAAGCATGCAAGAGAACAGCGTGGACCAGCCTACATCATTATCTCAGCTCTTGAGAGAGAACTACTTGGCCGAAGCACGAGCACACCAGAGACACAGCGAGATGAGTCGTTCCGACTCCTCCTCACGGCGCCTGGTCTACGGGCCCCTCAAAGGCAAGATGGCGGACTCTGCGGGGCTGGACGAGCCGCAACACCAGCTCCCAGACCTCTCAGCCTTCCTGAGTCAGGAAGAACTGGATAAGAGTGTTAACCTGGCCTGTCAGGCTATTGTACCCGAGGCCCGCGAAGAGAGGTCAGATGTCAAGGCCTCCCCCTCTGCCACCACCGACACTCCCGACACCCAGCCTGATCCGGAATTAAAAGAACCCCTACCAACACACCCGACATTCTTGCCAGAGAGACGGCCATACCCACCTCTGTCCCTCCAGGACAATGTTATAAGGACAGACGAACAGATATATCAGCCGTCCCAACCGTCCATCCAGGACAACTCaatgaggacagacagacagtcgtTCCCACCGTCCATCATCCAAGATATTGCAGTGAAGGACAACCGGGAGGACATTAAGAGACCAGGGGCGGGGGGGAGGAACACCCCGGCGTTCGGCCTGGAGAACCAGTCCAAGAAGGAGTTCCTCAACAAGGCAGCGGACTTCATCGAGGAGCTCTCCTCTCTGTTCAAGGCAAACAGCTCCAAAAGGATACGGCCCCGATCGTGCAAAGCTCATAGGAGCAGAGCCAACAAGGGCCAAGCCGATGGGAGCATTTACTCCCTGAACGCAGACGACAGAGAACGCCCCATTCTTCTCCAAGACTTCGAAATGGAGATGGAGAGGCCTGCTAATCCCTTCTGCATTCAGCCGCCAGAGGTCCAAGGTTTGGACATGGACCCGGGTTATGGGCACGCTGACTTCCCCATGCAGGACTGCAGGACTACTGAGGAGCAGTATGATGACTCTGAGGTGCTGGAGGCGGATGAAGTGGATGAGGCTGAGAGCCCTGCCCTGGTGGAGATCACCCCTGGAGTGTACACAGCCGACCCCATCTGTGAGCCCCCTCACTTCATCCAGAAACTGAAAAGCAGGGAGGTGTCGGAGGGCAGCAAGGTCCAGCTGGACTGCATTGTTCAAGGACTCCCCATGCCCGAAGTCCGGTGGTTCTGTGAGGGGAAGGAGCTGGAGAACTGCCCTGACATTCAGATCATCAACAACAGCGAGTTGCACTCTCTGATCATTGCCGAGGCATTCGAGGAAGACACAGGGCGGTACTCTTGCTTTGCTTCCAACTTCTATGGCACGGACTCGACATCTGCAGAAATCTACATCGAAGGTGCCTCCTCTACAGATTCGGAGGGGGAACAACATTTTGAGCATGTAGCACAGCTGCAGAGGACCCCAGCTCAACCGACTGCTCCATCTTTACATTCAGTGGTCTGTGCTGTGTCTGTTTGTGAGGAAGACACACCCATCTGTACTAAAGAACATCCACAGGAGGCCACCTCACTGACGTCTTGCCAGGTAGTCACTGCATCTGTACCTGTCAAGGAGACGTCAGCACCATTACCTGTCCAGTTAGTCTGTACTCTAGATCTACCACCTGTGGACATAGTGTCAGTACTGGCGCAGGAGGTGTCAACACCGTCCCTGTCAACACCGTCACCTGTCCCAGTGACGTCCACAACATCACAGACAAAGACAGTCACTACCACGGCACTACCGCTGACCCAGGTGGCTTCCTCTACACCTCCTGCCCAGGTGGCTCCCATACAGACGACTCTAGCTGAGaACCTAAACGGTGACAGCTATAACCTAGGTCTAGACGTCTATCCTCAAGGTCTAGACGGGAGGCCGATCATCGCAGCCCCTGTTTTCACAAAGAGTCTGCAGGACCTTTTGGCGTCGGAGAGCCAGCTGGTGGTGCTAGAGTGTCGTGTTAAAGGGGTGCCCTCCCCCAAGGTGGACTGGTACAGAGAAGGAACCATCATAGAGGATTCCCCTGACTTCAGGATCCTGCAGAAGAaGCCTCGATCCATGGCTGAATCAGAGGAAATATGCACTTTGGTTATTGCTGAGGTCTTCCCTGAAGATTCTGGAACATTCACTTGCACTGCAAGCAACAAATATGGAACTGTATCCAGTATTGCTGCACTAAGGGTGAAAGGCAATGataacaccaacaacaaccacgTGAAAACTCCACACAAGTCCACACAAGTCCCAGAGCCCTCTTCATTAGATCTCACTCCTCCCAGTCTAAAGCCTCAAGCTGAGGTTCCTGTGACCAACAGCATCAAGCCTCACTCCAACACCATCCGCCTGGATCCGCTCAGTTCCAGCACGTTACGACTGGACCCTCTGAGCACCAGTACCCTCCGTCTAGATCCTCTGAGCTCCAGCATGCTGCGCCAGGACCCTGTCAGCATCAGCATGCCCAGTCTGGACCCACTAATCCTGGGCAGCAGCCCCAGGATAGGCACCCGTAGCTCCAGCACATCTTGTCTGGATCCACTCTACCTGAGCACCCCTCACTCAGATCTGTCTACTAGCTCCAGCAGGGAACTTCCTGAGCCCAAGACTGACCATGAAGACTCCAGAGCCTTCTCAGTGTTATCAGACCCTGCCGTTGGTCTGAGTCCTAAGGTGGAAGGGACTCCTTTCCATAAACCTGAGCCCCCTCCCCCTGTAAACCTCCCTGATCCCCCCACCTCCTCTTGCCTCAAGCCTGGGGTTCTGGTGAGCCACAACGGGCCCAGGTCCAGCTCCAGGGTAGGCCTCCGTGTGCACTTTAAACTGCCTGAGAATGAAACAGACAACGAGAGTGAAACATCCGATAGCCATTCATATGACGATATGTCACAGTTGGCCAATAAGGAACCACCTCCAGTCCTGGCCAAGCCCAAACTAGACCCTGTCCAGCTGCAGCTTCTACACAACCAGGTGCTTATGGAGCAGCAGCAGACTGACACTGAGCCAACCGGAGCCACCCAGAGTCAACCGGAGGCATCTGCCTGGCCAGCCCGGAAGCAACCtgagccccagccccagctccagcacCAGCAAAGCCTACCCCGTTCATCTACCCCCATGCCCCTGCAGTCCACCCACCCCGCACCCATACTGACCATAGCCCCAACACCCTTACTCAACTTCACCCCTGTGACAACACTGAACACTACCCCTGCAACCCAGCTAAACACTAATGCCCCTGCACCTCTGCTTAACATTGCCTCTGCACCACTACTGAACCCATACGCAACCCAATCTtattttctttcttcttcttcaccCCTGCTAAACACAAGCCCTGTACCACCAATAAACACTACCTCTGCACTACTACTGAACACAGCCCCTCCTGCACCCATTATGGGTACCCTGCCATCCCCTCCTCAACTGAAGACAGCTTCATCTTGTATGAGCTCCCCTCCATCTGCCCCTCTGCTGAGTACTGTTCCTGCACCCCACCTGCATAccagccctgcatccccacccTATATGACCCTGCAAAACACCACCCATTCTTCCCAGCTGAACTTAGCCCCCTTATCCCTGCCTAAATCTATTCACGTACCCCAGTTTAACACACCTCTCATACCTCATCTGAATACAGCCCCCACAGCAACTCTCAGCTCCATCCCTGCAGCTTTCAACAGGGCCCCTACAACCATGCAGaacacctccccctccccccttctcagAACAACTCATGCCTCCCTCCTCAACCTGGCTCCCATTTCACAGAGCTTCAACTATGCTAGGCCAAAAGAGTTTATCACTGCCCAGACTCCCCTCTCTCCAGTCAGGAGTCCCTCCCCTACAGAGTCCCCAGTTCCGTTGCTCCACGAGCTGGCTGCCGAGCTCAACTCCTCCAACCCCAACCTGTTCTCTCCACAACCCAGAGTCTTCCCCACCAGAGTCCTCAAGTCACCCACTAGCCCCCCTTCCTTCAtgtcctcccccacctcccccaccCTTTTGCCTGCTGCCTACCTCAACTCTGTGTTCACCCTGCCACAGCAGTCACCCCCACAGGCAGCGTCCCCGACCTCCAGCACCTCCACCCCCAGCCCCATCCAGAACCATGTGGCCTTCCTCAGCTCTGTCCTGCCCTCTCTACACACCACACAAGCCACCAACTCGATGGGCCTGCCCAGGAGTGCCCATGGGCCACCTCAAGGCATGCAGAAGAAGTTGCCTACAAGCCCTCGTCCCATGTCAGATGTTGACATTCGTAGCAGCCAACAAACCCTCCTCCAGGATATGGAGAAAAAGCTTAGGTTCAATGAAGATTTTATGCGTGGTCATGTACAACAGAAGCAGACTACTTATGAGGGGAAAACAGCGAGCAGACCCCTCGGACCAAACATTCCTGCCACTGTCTTTAACTATGACGAGGAGTACAAAGTGTCCAACTTTGAGCAGAGGCTGTTGAGTGAGATAGAGTTCCGTCTGGAGCGCACGCCAGTCGAGGAGTCGGATGACGAGGTACAACACGATGAGAGCCCGACAGGGAAGTGCGTCGCGCCCATATTCGACAGGAAGCTGAGGAACTTCAGGGCTATGGAGGGTGTCCCTATGACGTTCTCCTGTAAAGTGGTGGGGATCCCCGTACCGAAGGTTTACTGGTTCAAGGATGGCAAGCAGATCTTGAGGAAAAATGATCATTATAAGAAGATACGAGAGGGGGACGGAACTTGTGTCCTACACATAGAAGTCACCAATAACGACGATGATGGCAACTACACTGTCATGGCAGCTAACCCCCAGGGACGAATCAGCTGCTCTGGTCATTTGATCATCCAAACGGGTCCTCTCCGAAACCGAATGACACCTATGATTCACTCTCAGAGGGTGCGGGCCCGCATACAGGAAGTAGAAGAGGGTGAACCAACCCAGGAGCGCTTCTTCCGACCTCACTTCCTTCAGGCACCAGGGGACATGGTGGCTCACGAGGGCAGAGTCTGTAGATTAGACTGCAAGGTGAGTGGTCTACCAAACCCAGAGCTGATGTGGCTGATCAACGGGAGGCCCATCTACCCAGACGTCTACCACCGGATGCTGGTGAGGGAGAACGGCATCCATTCCCTTGTCATAGACCCTCTAAAacaggacgacgctgggacatACACCTGCATCGCCAGCAACAAAGCAGGACAGAGCTCCTTCGGTCTGGAGTTAAGAGTTGTGGAAAAAGAGATGAAGCAGGCCCCCCAGTTTGTGGAGAAGCTCCAGAACACAGGCATCGCAGAGGGCACCCCCGTCCGACTGGAGTGCAGGGTTCTGGGCATGCCTCCACCTGTTATCTATTGGAAGAAAGACAACGACACCATTCCTCACACCAAGGCCAGAGTCAGCATACACCAGGATGCCACTGGATATGTTTGCCTCCTGATTCAGCCTACCAGGAAAGAGGATGCTGGCTGGTACACCGTATCAGCAAAGAATGAGGCTGGAATTGTTTCATGCACAGCCAGGCTAGACATCTATGCCCAGTGGCATAAGCAGGTCCCTCTGCCTATGAAAAAGGCTCCGCGGCAGGGCAGTCGCTATGCAGTGCTGACCGGCCAAGGCCTGGACATCAAATCTGCCTTCCCCACGACGGACAATAGCCCCATCCTGTTCTCCAGCTCCCCTGTGGAGGCACAGCTGGAGAGTGAGGAGCTGTGAGGAGCAGACACACTTCACCAGAGGGTTGTAAAAGTCTGTAAAATTTCCCATAATGCACAGGTTTTTCCGAAATTCCAAAAGTTTAGGAAAGTTTGAGAATTTTGTCAACCTACTCCACCACCACTTTAATCACAACTGGCCCTTTGAGTCTACAAACTTCTCTTCTCTGGAGTCTCatagggctggtttcccagacacagattcagccaaatcctggactaaaaagcatgcccaaaagagaatctccattgaaagtgcttttAGTTCAAGACTAGGcataatctgtgtctgggaaactgggtCCCAGAGTTGAGTCTGCTCTAACACCTCCTAATGACTAATCTACTAGTTCATCTAATCTGTGGTGGCCAGTGGGATGGAAGAGCAGGACTATAATCTTAGCAGTTTGTGTCATCTGGTTTGTGTGATACATTTGATGTGATACATAGAAATTACAATGACATAAACGGTTAGATTTACAACTGGCAACCTAATGCTCTGTTTGTTTTTCTGCCGTTCCTATTGTATCATTTGAAGCGTCTTATTCACACAAAACAGACAAACTTGCCAAGTTTTAGTTCACTATCATCTTTTGATAGGTCTgatttgtttatggttcatttcTACTTTTTGATTAGTTAGTTTGATATTGAGAAGGTTGTTGAATGTTGATGATCATGACATACTTTCATCATCATACACTTCAACCTGTTCTTTATCTTTAGCAAATTGACTATTTCGTTTGGACGTGGttgttgtatggtttgtttttaTTTCAAACGTATATATTTGTGTCAAATAAAGATAGTTTATTTTTAATgtttatataaaatatatgtgcATTAAATGTAAATCAAAGAAATACACTAAAGGAAAGCCAAACTGACAAattaaactcaatattaggaaggtgttcttaatgttttgtacactcagtgtgtatacagtggggagaacaagtatttgatacactgccgattttgcaggttttcctacttacaaagcatgtagaggtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75164 lncRNA upstream 1085 61570452 ~ 61571716 (+) True LOC110526250
TU75120 lncRNA upstream 28601 61541521 ~ 61544200 (+) False G67870
TU75122 lncRNA upstream 28601 61541697 ~ 61544200 (+) True G67870
TU75154 lncRNA upstream 60966 61511635 ~ 61511835 (+) True G67897
TU75106 lncRNA upstream 144237 61423275 ~ 61428564 (+) True G67856
TU75163 lncRNA downstream 1439 61624717 ~ 61626146 (+) True G67905
TU75213 lncRNA downstream 3649 61626927 ~ 61627131 (+) True G67955
TU75220 lncRNA downstream 7671 61630949 ~ 61631493 (+) True atoh7
TU75234 lncRNA downstream 23162 61646440 ~ 61646672 (+) True G67968
TU75248 lncRNA downstream 56861 61680139 ~ 61680608 (+) True G67982
XM_021607058.2 mRNA upstream 1032 61561612 ~ 61571769 (+) False LOC110526250
XM_021607066.2 mRNA upstream 1032 61561615 ~ 61571769 (+) False LOC110526250
XM_021607034.2 mRNA upstream 11463 61549181 ~ 61561338 (+) True LOC110526236
XM_021607008.2 mRNA upstream 31864 61517953 ~ 61540937 (+) False herc4
XM_021607015.2 mRNA upstream 31864 61518358 ~ 61540937 (+) True herc4
XM_021599334.2 mRNA downstream 6647 61629925 ~ 61631527 (+) False atoh7
XM_021607121.2 mRNA downstream 11885 61635163 ~ 61646181 (+) True pkd2l1
XM_021607133.2 mRNA downstream 54502 61677780 ~ 61684168 (+) True bag3
XM_021607193.2 mRNA downstream 64288 61687566 ~ 61710069 (+) True inpp5f
XM_021607213.2 mRNA downstream 110350 61733628 ~ 61745157 (+) False sec23ip
TU75047 other upstream 257549 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 1630737 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 2247672 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 2872422 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 2906895 58665334 ~ 58665906 (+) True G64315
TU75188 other downstream 106487 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 1651685 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 3186311 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 4292457 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 4292457 65915735 ~ 65922285 (+) True LOC110527164

Expression Profile