RNA id: XM_021607066.2


Basic Information

Item Value
RNA id XM_021607066.2
length 3198
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC110526250
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61561612 ~ 61571769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAATTGGTCGACAGTCTGCTTAGTTACACGTTCCTCCATTTATTTCCAATTTGGATTGCTATCTCCTCCTTTCAATATCTCTGGCCACACCGCGCCATACACCAAACGGCAGAAAACGTACCGCGAAGTCTGTTCAAGAACGTTTTGGGGAAACGTACAAACCGTTCCGCAATGTAGTTAACGTTCAAGTGAACTGAACGCACATTGTAGTCATTGCATGATTTTAACTACATTGCCCTTCTGCCCCAGTTCAGGCTCTGCCTAAAAGAAAATGCTGCAAAGTGTCGTAAAACAGTTTTCCATGCAGCAGCTAGCGTACAAGGTGTAAAGGGATGGTGCTCTAAAAACGCAAATTTTCAAATCGAACTTGAAATTCATGAAGATTTTCCTCAGACAACTTGCAAGGCTAAAGCATGGAGGACATGGAAGACGACTGTTTTGTTCTAAATGACGACTACAACCATAACTACTGTGCGAACAGTGCCAGTGGACAAGTCCTCTATCTCAGGAACGAACTGTCAGATGTACCCCAGCCCCTATCTATCTCGCCGGGTCTAGCCACGCGAGATGTAGCTGCGCAGGAGAACCACTCAAAGGTTTGTTCCAGTTCCAGCAGCGGTTTAAAGTTCATGGATTCAGACTCGAGCAGCGTGAGCAGTGACACCAGCGAGACTGACAGCCCATCGGCGGCGTCCATCGCAGGGAAACTGACCCTGAACTCAGCCTCAAAGTTTCTAATGAATGCAATGACCGAAGAGGACTATAGAACCACATACTGGCCGAACCTGGAGAAAGCCATTGACCACCTGCTAATACAAAACCCCATGGACCACATCTCCATTTCATATGAGCAGATTTACAGCTGTGTGTACAAGTGTGTTTGTCAACAGCACTCTGAGCTACTGTACAAAGACTTGATGCTGAAGATTACTACCCATCTTCAACAAGTCTCTTCTGATCTTCAAATTACTCCACCACGGAAtttaattgagaatttcaacattgcTCTGACTCGCTACACAGATGCTCTTCAATGCATAGTTCCCGTATTCATCTACATGAATAAGTTCTACATTGAAACGAAGCTAAACCGAGACCTGCGAGAAGATCTCATGAAGCTTTTTACCGATCATGTTGCAGAAAAACATGTCGACACGTTAATACCTCTTCTCCTCGAAGCCCATTCCATGCCTTTTCAAGTCAGACCTTCAACAATGGCCAGTGTGGTCAAAGGCTTGTATACTCTTTGGCCCGATTGGGCACATTTAGCTCCAGCTGTCTTCTCTGGATTCATTCCTCAAATCAACCCCCCAACAGTGGAATCCCAGCTCTCTGACTATGCTGCTCGTGACCAGAAACTACAAATGGAGCTATCTCTGAATGGTTTTCCCAGAGGTGACCAGTCTCGCAAGAGAGCCAGCGAGGAGTCTGCATAGAATAAGGATGATGCATACATTGCTTGCTATTGACTTTAAAAATATGCTCTGACCGTCAGCGACCTGGCTCAACCCAAATTGACAAAACACTGTGAATGACGAAGATTCTCTGATGCTGAGTGAAGTGGGTGAGCGTCAGCCAAGCTTCATTTTTGACCCACACGAGTTGTAGTGGACACTGTTTCTTTGCCTCCTCTGAAAAGCACAGTGAATTCATGATGGTGCATCATTGTTCTTTCAGTTTATGATGATAAATTCATCTTCTTTATTGTTAAGATACTACGAGGTTTATTTCCATTAAAGTGTGCCTTCTGCTCTGCTTTGTTGGGATATTCAAGTTGCCTAACAGATGCCATtttaggctcccgagtggcgcagcggtctaaagcactgcatctcagtgctagaggcgtcactacagacctggtttgattccaggctgtgtcacaaccggccgcgattgggagtcccataggtcccatagggcggcgcacaattggcccagcgtcgtccgggttagggcttggccggggtaggccgtcattgtaaataagaatattttcttaactgacttgccaagttaaataaatacaataaaaaaaaacaggtgGATGGGCATGAATCCCAGTTTCACCACATATTGTATACTGTGTCAATcatgggtcgtgttcattagggcatgcggcaacaaaaaaaaaaatggacagATATATTTTACAATGGAAAACAAAAAGGAATGTTTCTGATTGGACAAATCTGGGTAGTCCCTCCCTTttccatttttttccccctctttttGTTCCTAATGAACATGGCCCTGATCTCTAACCAGGACCACCCGGATCTCCTATTGGTCTTATTGATCTGATTGAGTAACTGACAGTCTGCTGCTATTCCTCAATTGTTGTTGTGTAGAACACTTGATTCCTGTCTCTTGTTTAACTAATATTGTGTCCCTTTTGTATCAGTCAGGTCAGTCTTGATTCTCCCCAGTGATTTTTAAGCTAAAGGGGCTTGTCTTTGTAATCTCGGCACACAACTAAATGTCCTGTTAGTCGACTTAACATTTAAAATCTCTATCATGGCAACTTTAAACCAATCCACCCCCCAAGTCTTGTTTATCTGGGATTTACAGAATAAAATCTGTCTGGCTTAACATAGTATTTCTTTCTCAATGGGTACAAAAAGCAGCAAAGCATGTTCCGTTACATTTTGAGTAAAGTTTAGGTTAAAACTGTGAAAAGGTTGTGTAGATAATTTTTTAAAGGATTACATTTAGCTTTTATTGAGTTGTTGTCTAACCAAATCATATTTGCCAAGCACGCTAAAGATGATTCACAATGTTTTTATTCCCTGTTATTAAAAGTTGCATTGTGACTCCAGAAATGATGGTGTCAGTCTCCCCATGTTGCTGCTGTAGCTGCATTAGCCTGTGCATTATATCAAGTCACCGAGCCAATTGATTACAATCAAATTTTGAAAATGTTGTGAATTTGGTTACAGTGATGTCAAATGATGTACAGTAGGTGGATGTTGAATGATCCCGCTGTTCTCTCAAGTTGCCCAGATGATGATCAATTTGACCTTCCTTTGTTACATGTTTATGTTGAGTGAAAGTATTTGATACAGCTCTTTGCACTGTTTTAAGTGTAATGTGATGCTCGAGCTTGGTTGTGATTGTTTTCCTGTGAGGATGTTGGAGATGACTCACTCATTGTCTTATGTACAGTTTTACTTTCAATAAACAAATCTTGAAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75120 lncRNA upstream 17415 61541521 ~ 61544200 (+) False G67870
TU75122 lncRNA upstream 17415 61541697 ~ 61544200 (+) True G67870
TU75154 lncRNA upstream 49780 61511635 ~ 61511835 (+) True G67897
TU75106 lncRNA upstream 133051 61423275 ~ 61428564 (+) True G67856
TU75104 lncRNA upstream 143888 61417130 ~ 61417727 (+) True G67855
TU75179 lncRNA downstream 12695 61584464 ~ 61584663 (+) True G67921
TU75196 lncRNA downstream 21808 61593577 ~ 61593781 (+) True G67938
TU75197 lncRNA downstream 22125 61593894 ~ 61594121 (+) True G67939
TU75208 lncRNA downstream 43624 61615393 ~ 61615668 (+) True G67950
TU75212 lncRNA downstream 50002 61621771 ~ 61621990 (+) True G67954
XM_021607034.2 mRNA upstream 277 61549181 ~ 61561338 (+) True LOC110526236
XM_021607008.2 mRNA upstream 20678 61517953 ~ 61540937 (+) False herc4
XM_021607015.2 mRNA upstream 20678 61518358 ~ 61540937 (+) True herc4
XM_021606997.2 mRNA upstream 56310 61501014 ~ 61505305 (+) True LOC110526212
XM_021606984.2 mRNA upstream 73188 61437979 ~ 61488427 (+) True LOC110526206
XM_021607077.2 mRNA downstream 1032 61572801 ~ 61623278 (+) False mypn
XM_036981823.1 mRNA downstream 1831 61573600 ~ 61623278 (+) False mypn
XM_036981826.1 mRNA downstream 1831 61573600 ~ 61623278 (+) False mypn
XM_036981828.1 mRNA downstream 1831 61573600 ~ 61623278 (+) False mypn
XM_036981830.1 mRNA downstream 1831 61573600 ~ 61623278 (+) False mypn
TU75047 other upstream 246363 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 1619551 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 2236486 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 2861236 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 2895709 58665334 ~ 58665906 (+) True G64315
TU75188 other downstream 157996 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 1703194 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 3237820 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 4343966 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 4343966 65915735 ~ 65922285 (+) True LOC110527164

Expression Profile