RNA id: XM_021599334.2


Basic Information

Item Value
RNA id XM_021599334.2
length 1603
RNA type mRNA
GC content 0.41
exon number 1
gene id atoh7
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61629925 ~ 61631527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGTGTTCCTCAGTCTCTCCAAGGCCAGAGACACAGAAGCTGTTTTACTGTTTATGCTTAGCAGAAGACCAACACTTTGGATTAACTTCAAATTGTTCACTAGACATACAGCTTCATCAATACACAGCTTAATTAGACAAGGACTTTGGACAGCTACCACGACACCAGACCATTTTGGACAGCTACAAGAGGAACTTTGCGAAATTTGAAAACGTCTTCAAACAGTCTGGCGGTTAGTTAACACACCACTTGACTTGGTTGACTCATCGCCACATTTTGGGAGGTTTTGGTAACATACAGAACCAGGAGAAAACTTGTGAACTGAATCGTGGAATTGTGGCCAAAACCATGGTGTCCCGCCAGCCCAGTTGCACTGGATCTGACTCTGGATCCGAGTCCGAGAGTCTGGATTCCAAGTCTGGATCTCCAGAGAAGCACGATGGTTCCACACGGCGGAGGATGGCAGCCAACGCCCGTGAGAGGAAGAGGATGCAGGGGCTGAACACAGCCTTTGACCGTCTCCGCAAAGTGGTCCCCCAGTGGGGCCAGGATAAGCAACTGTCCAAGTACGAGACACTGCAGATGGCCCTCAGCTACATCATGGCCCTCAGCCGGATCCTGACGGACGCCCAGAAGCGCAAAGCCCCCCACAGACAGTGGCTGGACCTGCAGTTTGACTCTGTGCAGCCAGAGAACTATCAGTGCTTCAGTACTATCAGGTACAGCTCTCCAGTTGAACAGGAGTACATGCATTCGTCCTTTCCCTACCAGTACGACGGCCTCCAAGTTCCTACATAGACTAGATGGAAAACTGAAAAACTAGTCATGTTGTTTGAGGTGAACGACAATCTGTACTTGTTTTTATGATGCAGGCGTTTTTCTCCAACCCAGGAGTCAATAAATAGATTTGTATTGCTTTTTATTTATAATTTATAAAAAATCTATTTATtgacatttgtttattttttatgatTATTAAGTTTAGACATACGTTTAATCAAAAATTCTTCCAAACAAAGCAATTGACAGCTTGTATTGCATTTCAGTGTACTGTACTGCAATTGATTTAGCAAAGAGTTGGTTCCTCTGTAAACTCTTCCCTGGTAAACACAGACATCTTGgctttctctattttctctctctctctgtactgttgggaagggcccgtaagtaaacatttcgctgttagtctacacctgtttttaatgaagcatgtgacaaagaaaatttgatttgatttgtatcaaATCTTCCAGATGAGACCCTGACATCATTTTGTGTAATTTATAGTGAATGCGAATCATAGGATTACAAGTGGAGTTATTTGCCCCAATTGTTATTGTGTCAAAAAACAGTGACATTTTACGACTTTGGTAAGATACATTTTGAATCTATTTTTGTAAATGTTAAACTTTTTGCCATAGAGTCTAGTTAACATAATGTTCTCTAGCCACGAAATGTAGGCATTTTGGAAATTCTACATGTTTTTTTGTGCTCTTCAGTTTTTCTAAACTGTGTTTAAAACTGTGTTTGTTTAATAATAATTTTTCTACCGAAATAAAAGTTGCTAGCTATTTTATTGAAATTGCTTTTGAGTTGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75213 lncRNA upstream 2794 61626927 ~ 61627131 (+) True G67955
TU75163 lncRNA upstream 3779 61624717 ~ 61626146 (+) True G67905
TU75212 lncRNA upstream 7935 61621771 ~ 61621990 (+) True G67954
TU75208 lncRNA upstream 14257 61615393 ~ 61615668 (+) True G67950
TU75197 lncRNA upstream 35804 61593894 ~ 61594121 (+) True G67939
TU75234 lncRNA downstream 14913 61646440 ~ 61646672 (+) True G67968
TU75248 lncRNA downstream 48612 61680139 ~ 61680608 (+) True G67982
TU75259 lncRNA downstream 129936 61761463 ~ 61762278 (+) True G67993
TU75284 lncRNA downstream 161061 61792588 ~ 61792802 (+) True G68018
TU75287 lncRNA downstream 161522 61793049 ~ 61793320 (+) False G68019
XM_021607077.2 mRNA upstream 6647 61572801 ~ 61623278 (+) False mypn
XM_036981823.1 mRNA upstream 6647 61573600 ~ 61623278 (+) False mypn
XM_036981826.1 mRNA upstream 6647 61573600 ~ 61623278 (+) False mypn
XM_036981828.1 mRNA upstream 6647 61573600 ~ 61623278 (+) False mypn
XM_036981830.1 mRNA upstream 6647 61573600 ~ 61623278 (+) False mypn
XM_021607121.2 mRNA downstream 3636 61635163 ~ 61646181 (+) True pkd2l1
XM_021607133.2 mRNA downstream 46253 61677780 ~ 61684168 (+) True bag3
XM_021607193.2 mRNA downstream 56039 61687566 ~ 61710069 (+) True inpp5f
XM_021607213.2 mRNA downstream 102101 61733628 ~ 61745157 (+) False sec23ip
XM_021607206.2 mRNA downstream 102102 61733629 ~ 61745157 (+) True sec23ip
TU75047 other upstream 314673 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 1687861 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 2304796 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 2929546 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 2964019 58665334 ~ 58665906 (+) True G64315
TU75188 other downstream 98238 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 1643436 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 3178062 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 4284208 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 4284208 65915735 ~ 65922285 (+) True LOC110527164

Expression Profile