RNA id: TU75248



Basic Information


Item Value
RNA id TU75248
length 470
lncRNA type intronic
GC content 0.33
exon number 1
gene id G67982
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61680139 ~ 61680608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccactggtcacgtgtgctagcaaggcagaggtcctgggttcGAGCCTACAGTGTTGCGCCGAATTAGGAGGAAGCGATACTTGCTAGGCAAGCAGTGTGACGTCCTTTATATAAGCAAGCATAAGATGACAGCATAATCATAAAAGACAACAAAGCATTAATGTTATAATTGTTGGTGAACCAGTTATATTCTGACCACAAACAAGAATACCTAGATCTTTTTTCAAAATATTTGAGCTGAGGAACATTGTATTTGTGGGCCTTACCGAATCTGTTATTGTTGGACCGCAGTATAAGCGGTATGGCTCTCCAGTACACATGTATAGCCTGAAGGCAAGCAAATATTGGAGTATTCTTAAATCACTCACAATTAAATATACTTTATTGCTAATTAGATTTGCATGGTAAAGCAAAACTGGTCATGTATTGATATCACAGAGAGACTATTTTCCACTGTCACTGTCAGGTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU75234 lncRNA upstream 33467 61646440 ~ 61646672 (+) True G67968
TU75220 lncRNA upstream 48646 61630949 ~ 61631493 (+) True atoh7
TU75213 lncRNA upstream 53008 61626927 ~ 61627131 (+) True G67955
TU75163 lncRNA upstream 53993 61624717 ~ 61626146 (+) True G67905
TU75212 lncRNA upstream 58149 61621771 ~ 61621990 (+) True G67954
TU75259 lncRNA downstream 80855 61761463 ~ 61762278 (+) True G67993
TU75284 lncRNA downstream 111980 61792588 ~ 61792802 (+) True G68018
TU75287 lncRNA downstream 112441 61793049 ~ 61793320 (+) False G68019
TU75286 lncRNA downstream 112766 61793374 ~ 61793884 (+) True G68019
TU75315 lncRNA downstream 151417 61832025 ~ 61948733 (+) True G68046
XM_021607121.2 mRNA upstream 33958 61635163 ~ 61646181 (+) True pkd2l1
XM_021599334.2 mRNA upstream 48612 61629925 ~ 61631527 (+) False atoh7
XM_036981827.1 mRNA upstream 56861 61573601 ~ 61623278 (+) False mypn
XM_021607193.2 mRNA downstream 6958 61687566 ~ 61710069 (+) True inpp5f
XM_021607213.2 mRNA downstream 53020 61733628 ~ 61745157 (+) False sec23ip
XM_021607206.2 mRNA downstream 53021 61733629 ~ 61745157 (+) True sec23ip
XM_021607421.2 mRNA downstream 383642 62064250 ~ 62097505 (+) True fam204a
XM_021607433.2 mRNA downstream 472741 62153349 ~ 62168687 (+) True LOC110526440
TU75047 other upstream 364887 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 1738075 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 2355010 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 2979760 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 3014233 58665334 ~ 58665906 (+) True G64315
TU75188 other downstream 49157 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 1594355 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 3128981 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 4235127 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 4235127 65915735 ~ 65922285 (+) True LOC110527164

Expression Profile