RNA id: TU75163


Basic Information

Item Value
RNA id TU75163
length 1410
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G67905
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61624717 ~ 61626146 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatcaaatacttgttctccccactgtagcaaGTACTATGAatatgaccaggtgaatccaggtgaaagatatgatcccttgtTGTTGTCaattgttaaattcacttcaatcagtgtagatgaaggggaggagattggttaaataagtatttttaagccttgagacaattgagacatggattgtgtgggTGCCATTCctagggtgaatgggcaagacagaatatttaagtgcctgggtttttcacgctcaacagtttcctgtgtgtatcaagaatgatccaccacccaaaggacatccagccaacttgacacaactgtgggaaccaTTGgtgaacatgggccagcatccctgtggaacgctttcgacatcttgtggagtccatgccccaacgaattgaggctgttgcaactcaatattaggaaggtgtccttaatgatttgtacactcagtgtatatagccaGCTCTACTATGAATATGTCTTTACAATTTGATATCTAGAATTGGTTCGAAAATATGATTGAGTTCACCTTGATGATCAATTAAAACAGAATATTTCACATCGAATACATGATTTGTAAATGCACACTTTTGCACTGTGGTCCTGTTGTGTTTTGAGTCCATACTGATAGCATATGGAAACGCAAGTGAACTACTGTAAGCAAAGGATGGCATTTTTGTTGTGCAAAAGATACAAGGTAGGCCTCATTATAAACTTGCAGTGTGATTACATTTGAAACGTTTCTGCTAAAATGTGTGTTATCAGGTGGCGATCATTTGACAACAATAGATAAATAGTCGCCTCTTTATCACGCAGTTTGAAATGAAGCCAGATTGGAATGGGGTTTATGGTCATTTTTGCGCTTTGCTCAATGCTTTTTGCATAACGAAAATGGCTCTGTTTCTTCTCACTGCCTCATAAATGGATAGTTGTGCTTACAGTAGCTTAACAGTACACCAGGAGCCTTATCCAAGGATTGCATTTCAAACACTATCATGATGTTTACTTGACAGAAATGCCTTTTTAAGGTGAGGGATTTGAGCTGCTATTTCTGCTGTATGGAGATAGGTAACTGAATATGTAAGTTATTTTAATAAGAAAAACGAAATTCTGACAGGAATTTATGCAATAATGTTCATGCAGCAGTATAGTTGTACTTTGAAAAATATACTCATGTGTTTCAATGTTAGTGGGTCTAGTGATAGGAAAGATATTTGTTTGTTGGTAGGCACATGTGCTTTAACAGGATTCACTGATAGAATGAAATGTATGTGTGGGAGAAATTATGTTTTGACGTTTTGATGGAACTGTACACACCCTTGTAGCTAACATGCGATTATTGAAAAACAGATTAAATGTTTGAACACATATTCAATAAATGTAAAGTTGCACCATgtaaaatagttttttcc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75212 lncRNA upstream 2727 61621771 ~ 61621990 (+) True G67954
TU75208 lncRNA upstream 9049 61615393 ~ 61615668 (+) True G67950
TU75197 lncRNA upstream 30596 61593894 ~ 61594121 (+) True G67939
TU75196 lncRNA upstream 30936 61593577 ~ 61593781 (+) True G67938
TU75179 lncRNA upstream 40054 61584464 ~ 61584663 (+) True G67921
TU75213 lncRNA downstream 781 61626927 ~ 61627131 (+) True G67955
TU75220 lncRNA downstream 4803 61630949 ~ 61631493 (+) True atoh7
TU75234 lncRNA downstream 20294 61646440 ~ 61646672 (+) True G67968
TU75248 lncRNA downstream 53993 61680139 ~ 61680608 (+) True G67982
TU75259 lncRNA downstream 135317 61761463 ~ 61762278 (+) True G67993
XM_021607077.2 mRNA upstream 1439 61572801 ~ 61623278 (+) False mypn
XM_036981823.1 mRNA upstream 1439 61573600 ~ 61623278 (+) False mypn
XM_036981826.1 mRNA upstream 1439 61573600 ~ 61623278 (+) False mypn
XM_036981828.1 mRNA upstream 1439 61573600 ~ 61623278 (+) False mypn
XM_036981830.1 mRNA upstream 1439 61573600 ~ 61623278 (+) False mypn
XM_021599334.2 mRNA downstream 3779 61629925 ~ 61631527 (+) False atoh7
XM_021607121.2 mRNA downstream 9017 61635163 ~ 61646181 (+) True pkd2l1
XM_021607133.2 mRNA downstream 51634 61677780 ~ 61684168 (+) True bag3
XM_021607193.2 mRNA downstream 61420 61687566 ~ 61710069 (+) True inpp5f
XM_021607213.2 mRNA downstream 107482 61733628 ~ 61745157 (+) False sec23ip
TU75047 other upstream 309465 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 1682653 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 2299588 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 2924338 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 2958811 58665334 ~ 58665906 (+) True G64315
TU75188 other downstream 103619 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 1648817 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 3183443 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 4289589 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 4289589 65915735 ~ 65922285 (+) True LOC110527164

Expression Profile