RNA id: XM_021625427.2


Basic Information

Item Value
RNA id XM_021625427.2
length 2299
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110538540
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23888015 ~ 23897552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCACATCATACAAGTCTGACACGTCGAGAAAGGACCAGGAACCGCTGCGAATTCAAACCCTGAAGAAGAGACCAGAGGAGCTGACAAGGTGTTACAAAGAAAAAGGGATTCTGACATGCACTGGCAGAAATCACCGAAGGAGAAGCCGTGTTACACTCTTCCCACAGTGAAGAAACTCCTGgagcagaagaggaagagggagacctCCTCGACGGCAACAACCAGTACCGGTGTCCCCACTGCCACTGTCCTCTCCCAACAGGTGTCAACACCAGAGAAGTCTACCTCAACAGGTGTAGCCAGCAGCTACTCAGACATGGCAGTGGGGTATGAGAGATGGGGTCCTATGGATGAGCACCAAGCCCTCTCGGCCATACATGAAGGTCCATTCTCCCCTATGGGGAACAATTACTTCTCCAGCCCATCCTCCTCAATGGACTACAGCCAAACTCCGGCCTACAGCACTCAGATGGCCTCCAGCTACAGCACACAGCAGATTCAGGACTACTCAGACACCAGGATGCCCCAGTGTTATACGGAGTGTCCAGTGACCGAGGCTGTGTCTAGTTTGGTTCCTTCAGGGCCCCTGCAGTCTGCTGTCTTCTCCTGGTCATCGGGGGCCCTGGGCCCCACAGAGCTTGTCCAGCAGGTGTTTAGTGGCCAGATGGATGTCATTAAGCTGGAGGAAGCCAGGATGTTCCTCAGAGGGATGGACTACAGCAGAACCACCTGGCAGGATGACGACGGAGACacGATTCTGCACATCTACACAGCCAAGGGCCTGAGGGAGTATGCATTTGCTGCAGCAGAGAGGCTTGCTGAGCTGGGCAAGCTAGACTCCAAGGAACACAAGGGGAAGTCTGCTTTGCTGGTGGCGGTGACTGCTAACCATCCAGAAATCGTCCAGGATCTGTTGTCTTTAGGAGCGGATATAAATGCCTGTGATGTCAAAGGTCAAACAGCACTTCATCTTGCTGCCACCTATGGCTTCCCCAGGGTTATGCAGGTTATTCTCTCCATTGGGCCTGGAGTGAACCTGGAGGCTCGCAATTTTGAAGGTCTGACTCCTCTGCACTGTGCAGCCATCTCTCACAGTGACACCATgaagactctctcctccctctcctccaccggGCTGGGTGATGCCAGCCTCCATGCCCTGGCAGAGGAGAAGCTCTCCTGGCTGCAGATGCTACTCAACACTGGAGCCTCCCTGACCAGCCAGGAAATCAAAAGTAACAAGACTGTTCTTCACCTGGCTGTGAAGGAGGGGAACATCCAGCTGGTTCGCCATCTGCTGAAGACCCCCCTAGACAACATGAGGGACTTTGTCAACATGAAGGCCCATGGTCATACTGCGCTGCACATGGCTGCTGGTCTCCATGGCAGCCCACACCAAGAGGAGATGCTGAGGCTGCTGCTGGGCCGAGGGGCCGACCCCAGCATCCGCAACCTGGAGAACGACCAGCCTGCACACCTGCTGCAGAGTGGACCCCACGGGGAACAGCTCAAGCTCATCCTGAAGAAGAGAAGTGCTTCCTCTCGTCGACGTGTAATGTCCTTACAGGACCAATAGTGACCCGGACTACTTTTTATGTCCCTGTGTATCCCTCCACCTCTTTTCAGAGGAAGTACTGAAGGTCTGCACTGTAGGTTGAATCCAGACATCTGTACTTCCAAGAGGGAGGGATTCTAGCGTATCTTCATGTGAGGATTTTCAAACACGGCAAATCTCTAATATATACTAGGGCATTCACTTTGAAACTATATGTTTGATTGACATGATTTTGGTCACTATCTGAATTCAGTTCTGAATTTAATAATGGCTAGCTAGTAATGAGCAATGGTAACAGGTGGTATTCCAGTCCCCCCTGATATTACTGTCACTCAGTACAACCTTGATTTCTATGAAATCGTTTACATTATATTCAAAGCTGCACAGACTCATTGTGTGAGTACCCCCCAGCCGGGAAGCCCTCTTTAGAGGTATATCTGAGGAGGGTTTCTGGGCTCCCACCCCCACTCATTCTCTTGTCAAAACTTCCCACCATGGTCAGAAATCATATTGGTTTGTTGAAAGGTGGTTGTTGTTTCACTAAGCATGTGACACAGTGTACCATTGTGCTCATGCTTTCAATGTCTTTTATaacttaactaggtctttctttttATATTTGATATACTCACAGCGCTCATTGAATAGCTAACATattgtcagtggtggaaaaagtactcaaaaatcatacttgaataaaagtaaagataccttaatagaaaatgactcaagtaaaagtgaa

Function

GO: NA

KEGG:

id description
K14214 NFKBID; NF-kappa-B inhibitor delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144152 lncRNA downstream 6379 23879727 ~ 23881636 (-) True G124775
TU143132 lncRNA downstream 212712 23675086 ~ 23675303 (-) True G123902
TU143112 lncRNA downstream 236482 23651302 ~ 23651533 (-) True G123882
TU143093 lncRNA downstream 261004 23626744 ~ 23627011 (-) True G123863
TU143089 lncRNA downstream 263114 23624702 ~ 23624901 (-) True G123859
TU144218 lncRNA upstream 5403 23902955 ~ 23903302 (-) True G124839
TU144256 lncRNA upstream 53430 23950982 ~ 24015924 (-) False G124864
TU144257 lncRNA upstream 53430 23950982 ~ 24015924 (-) False G124864
TU144253 lncRNA upstream 104007 24001559 ~ 24015924 (-) False G124864
TU144255 lncRNA upstream 116290 24013842 ~ 24015924 (-) True G124864
XM_021625209.2 mRNA downstream 280144 23559422 ~ 23607871 (-) False LOC110538403
XM_021625234.2 mRNA downstream 280144 23559422 ~ 23607871 (-) True LOC110538403
XM_021625225.2 mRNA downstream 280145 23559422 ~ 23607870 (-) False LOC110538403
XM_021625259.2 mRNA downstream 280145 23559422 ~ 23607870 (-) False LOC110538403
XM_021625218.2 mRNA downstream 280147 23559422 ~ 23607868 (-) False LOC110538403
XR_002475018.2 mRNA upstream 186891 24084443 ~ 24090618 (-) False LOC110533695
XR_005035947.1 mRNA upstream 186891 24084443 ~ 24091464 (-) True LOC110533695
XM_021625650.2 mRNA upstream 227402 24124954 ~ 24131365 (-) False LOC110538681
XM_021625658.2 mRNA upstream 227402 24124954 ~ 24131603 (-) False LOC110538681
XM_021625667.2 mRNA upstream 227402 24124954 ~ 24131603 (-) False LOC110538681
TU142857 other downstream 606217 23280179 ~ 23281798 (-) True LOC110538355
TU142589 other downstream 688763 23185640 ~ 23199252 (-) True G123435
TU142449 other downstream 882203 23004986 ~ 23005812 (-) True G123308
TU142062 other downstream 1509855 22376153 ~ 22378160 (-) True G122972
TU141994 other downstream 1732286 22149517 ~ 22155729 (-) True LOC110537842
TU144219 other upstream 6287 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 261615 24159167 ~ 24161443 (-) True LOC110538705
TU144410 other upstream 371674 24269226 ~ 24270136 (-) True G125003
TU144456 other upstream 427028 24324580 ~ 24324836 (-) True G125043
TU144590 other upstream 634110 24531662 ~ 24534529 (-) True LOC110538887

Expression Profile