RNA id: XM_021625234.2


Basic Information

Item Value
RNA id XM_021625234.2
length 4531
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110538403
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23559422 ~ 23607871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGTGAATCTCGAGTGGAGGGTTGAGAGAGTAGCAACTTCATTGAGTTTAGGCAAAACTGCGCGAGAAGCAGGACGGAGCGCAACTCAGCATCAGTACCGACCGGAAAAAGAGAGAATAGCCTTCAGGACACTACTGTGGACAAACAGACCGTGAGATGTACTTCATTCAAAAGCAGTGAGTTGCAACAACTTGAGAGGGAAGAGGAATACATCGATCGCACAGAGGATACATATACGCTGTCATACTGAAAAAGTTCCTAACTATGGAAAATAATTCCTAAATGACTGTAAGCAAAGTGTTCGGACAATACCAGTGCTTTGAGAAGCATACGATTCCAGAGACAGGCACATCACCGGTATGTTTGATTTACCCAAGCAGTGATATTGTTTTGCACGGCGGTTGAGAATAACCAGCAAGCGGCAGCCCTCACCCCAGTCGCATTGACGGAACAATAGATTCCCGTCCTACACTTTCGGGGAAAACACAGCCAAACCGGCGACAGAAGACAAGATAAAATGTTGGCGTTTTACCTCGTCATTTGCCTTATGGGAACAGCTACCCAAGCAGCCTACTTTTCCCAGCAGCCCCAAGACCAGGTAGTGGTGTCTGGCCAATCGGTGACTCTGCCCTGTGTTATCGTGGGGTACCGGGGAATGGTGCAGTGGACCAAAGACGGCCTGGcgctgggtggagagagagatctgCCAGGGTGGACACGCTACTCCTTAATGGGAGACCCGCTATCAGGCGAGCACAGCTTGATGATCGACTCGGCAGAGCTGGCTGATGACGCCGTGTACGAGTGTCAGGCTACGCAGGCCGGACTGCGCTCCCACCGAGCCAAGCTCACTGTTCTAGTTCCCCCCACAGAcccggtggtggagggaggtccTATCATACGTGTGAAGGCCCACACACCCTACAACCTCACCTGCCGCGCCTCGGGGGCCAAGCCTGCCGCCGAGATCACCTGGTACAGAGACGGAGAGGTCATGGACACGGCCATATACTCCAAGACGCGGATGGAGGATGGGAAGAGAGAACTGGCTGTCAGTATGCTTCCTGTGGTGCCGGAGGACAAGGACTCTGGCCGTACCTACACATGTCGCGTCCTCAACCCCGCCGCCCCCGCCGGACTCCAGACCTCTGTCACCATCAACGTCCAGCACCCCCCATCAGTGACCCTGTCCGTCCAGCCCCAGACTGTCATGGAGGGAGCCAAGGTTCTGTTCATCTGCTCTGCCTCTGCCAACCCTGAGATCACAGGATACAGGTGGTCCAAGGGAGGAGTCCCGATCTCAGAGGCGAACGGGGACAGCCTGGAGGTGACGGTAGACCACTCGTACTTCACAGACCCTGTCTCCTGTGAGGTGTCCAACTCAGTGGGCAGCACCAACGTCAGCACCCTGGTGGATGTACAATTTGGTCCCAGGCTGCTGTCGGAGCCCAAGCCCATGAACGTGGACATTGGGATGGACGCTGCCTTCACCTGCACCTGGACAGGCAACCCTCCCCTCACCCTGGCCTGGACCAAACAGGGCTCAAGCGTGgtGCTCAGTAATGGCAACACCCTGCAGCTGAAGGCTGTCACCCAGGAGGATGCTGGGACATATACCTGCAAGGCCATCGTTCCCCGCATCGGTGTGGCTGAGAGGGACGTCACGCTCACTGTCAACGgcccACCTATCATTACAGCGGACGCCACACAGCACGCTGTCAAGCACTCCAAGGGCAAGCTAGAGTGCCTGGTGGGAAACAACCCCCCGCCTGACAAGATTGTGTGGACGTTTGGAGACGTGACCCTCTCCTCGGGCTCCTCCGGTCGTTTCTCTGTCCAGACGGTGACCAGCGACCACGGGGTCCTGTCCTCCCTGGTCCTGTCTGAGACCCTGGCCCAGGACTTCCTACTCCGCTACAACTGCACCGCATGGAACCGCTTCGGTACAGGCACCGCGCTGGTCACCCTCAAGGAGCAAGAGGCCCTGCCCATGATGATCATCATTGGGGCGGCAGTGGGCGGAGGGTGTGTCCTGCTTATCTGTGTCGTCaccctggtctctctctgctgcaggcaCACCGGAAAAGGTAAAAAGTGCACACGCCTCTCAAAGAGTGACATCAGAGTTCAGATTGTGCACAGCGACCACAACGCTACCCGTGGCaacgatgatgaggaggatgtCAAGGAGCCGATGGGCCTGTTGTTTCCCCCTCAGGCCCCCAACAGCAGTGAGTCTCCTGGGACATCCCGGACGGAACACAGTGACCTGCtggaggaggacgaggacgagAGGTCAGACATCAAGGTAAAAACCGACCCCACTAACGGCTACTACAACGTGCATGCTCACGAGGACCGGGTGATCCGCAGTGGTTTCTCAGATTACGTGCCCAACCCCCGTCCTGTCTACACTCCATCCCAGCTGCCCTCCCCCAGCCCGCTGTACGGCCAGCACACAGTGGTGGCAGCCACACAGCCCCGAATCTACGACTTCTCCCACCGCTACGCCACCACCACAGGGGCCCGCTCCACCTACGAGCAGCAGCAGGCAGCGGCAGCCCAGCCCGGGGCCATCTACCCCACCGACCCAGTCTACAGTGGCTCTGCCTACCTGCCCACCGCCGCCACATACGGCCGAGCCTTCACCAGCTACGTCAAGCCCGCCTCCTACGAGAAGGTGGACGCCTACGATCAATCGGACCAGGCCAGCAAGGTGTCTAGCTCCTCCCGTTTCTCATATGCATCATCGCAGGTCTCCTCCCAGCAGTCCGACTACGGACGGCCGTCACAACGCATGCAGACTCACGTCTGATTGGACAGCGGAACAGGGGGTGAAGCACGGAGGGCCATGTAAAGGGGAAGCATTGGTCATCTCTATAGGAAGTGTGGCCAGACTAACATGAGGAGAGAGAACTGGATGGCTGGTCCTTCTCCTGGACACGTTTTGGAAGGAGATGTAGGTGACAGGGATTGCCTTCCTTATTTGTTATTCAGTTGTCATTCTGGGATTGAATGGTCCCAATGGAGTCCCAATGGCATCAATGATTGTGATGTGCCACTCACATTCCCCATCAATAAATAATCTACTACAGTGTCTGCTACTTCAGAGATGAGCCTGCTATTCTGTCATGGCACTGGTTTTGTTTTACCAGTGAGGGGATGAGAGGAAGGCAAACTGGAAATCACCAGCTTTGGGTGGCCTAAACTAACTGGATGCTGGAGCCTAGCTAACATTTCTCAAAAAGAACAGACTGCTCAGACAAATAGAACTTCTAACAGACTATGAACAAAATTAAAAATACAGAcgtcttcatttaaaaaaaagaagaaaaaaaaagagtcaACACATTGTGGTCATTTGGTGTTTGTCGGCATGTGAAAGGAGTTCTAAGCAcattcctgtctctctatccattTAAAGAAGCCTGAGCTCCACAATGGCAGCCATAAACCGCTCTGCAAAACAATATGTTTAGCTTGTGTGTGGGTTATCTGGGAGTGAAAGCAGAGTGAGGTATGGAGAGAATGTGTATCCTAGCCTTCACCTAATAGAGAGACAGCCTGTGTGTTACCGTTCTACCCTGGAGGACAAGAAAAGGAAATGGAAAAGCCCAAAGATGGTGAGCTACAGTACATAGCAGTGTATTGAAAGAGTTAGTGAGATGAATTCCTCTGGGTACTGTATTACTTCTGTGTTTACCAGATTGCTATTTCCAGAACAATCAGAGAATGTGGTTTGTAAAATGGTGGCAATCTTGAACTTGAATAATCTCAAGGTGCAGTCTCAACTTGAACAGGCTAAGATGGGTTCTACTTGTGAAACTGTCCCTCTTCAGACACCATCCACACTCCAGTCTTTATGACACAATCAAGTAGCTTCAATATGTTTACAAAAACACAGTACTACCCTGAAATACTGACTAGATCAACTGTACAAATGGGTGAAGAAGGCCCATTCTTTCTCTGTTGCATGCAGATGATGTGTCTAGTGAAACTCTTCAGCATTTCTTTTCCATGTCCATTATGCTTGTTTGAGAGACTGCTTAATGCACCTGGCTCAGTTGCATTCCGGTTCTGGACACTACTGGAACCCTGTACTGCCATTTTGTGTCGAGAGCCGTGCTACCGGTCAGTCGGCCCAATTGGAAAACAAATGTCACTAAGTGAACCAagtgatttaaaaacaaaaatcATCGCTCgtctttatttttatattttatataagCCTTAATGTACAGCTTGTAAGCTGATTTACTGTAAAGTAtctttatattatatatacatataattcTATATCATGATTGATTTTATTTGGGTCCACaatttctctccttctgttccgTTGTTCATCAATCACTGAATGCAGAAAGATGAACTATGCTTTTTGGGAACACAACTAATTGCCATTTGTTGGTTTGGttcattttgtttttttaataatgTATTAAGGATTTTATTTGCTAAAAATGAGCTATTGTTGCTTGTAACTTTGTAcacatatttatatttaaataaAACCATTTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143046 lncRNA downstream 4219 23554992 ~ 23555203 (-) True G123822
TU143045 lncRNA downstream 4653 23554199 ~ 23554769 (-) True G123821
TU142870 lncRNA downstream 193499 23264303 ~ 23365923 (-) False G123662
TU142871 lncRNA downstream 193499 23264303 ~ 23365923 (-) True G123662
TU142863 lncRNA downstream 304168 23252782 ~ 23255254 (-) True G123656
TU143089 lncRNA upstream 16831 23624702 ~ 23624901 (-) True G123859
TU143093 lncRNA upstream 18873 23626744 ~ 23627011 (-) True G123863
TU143112 lncRNA upstream 43431 23651302 ~ 23651533 (-) True G123882
TU143132 lncRNA upstream 67215 23675086 ~ 23675303 (-) True G123902
TU144152 lncRNA upstream 271856 23879727 ~ 23881636 (-) True G124775
XM_036942697.1 mRNA downstream 38954 23456740 ~ 23520468 (-) False LOC110538151
XM_036942704.1 mRNA downstream 38954 23456740 ~ 23520468 (-) False LOC110538151
XM_036942710.1 mRNA downstream 38954 23456740 ~ 23520468 (-) True LOC110538151
XR_002475740.2 mRNA downstream 114214 23420299 ~ 23445208 (-) False LOC110538371
XM_021625427.2 mRNA upstream 280144 23888015 ~ 23897552 (-) True LOC110538540
XR_002475018.2 mRNA upstream 476572 24084443 ~ 24090618 (-) False LOC110533695
XR_005035947.1 mRNA upstream 476572 24084443 ~ 24091464 (-) True LOC110533695
XM_021625650.2 mRNA upstream 517083 24124954 ~ 24131365 (-) False LOC110538681
XM_021625658.2 mRNA upstream 517083 24124954 ~ 24131603 (-) False LOC110538681
TU142857 other downstream 277624 23280179 ~ 23281798 (-) True LOC110538355
TU142589 other downstream 360170 23185640 ~ 23199252 (-) True G123435
TU142449 other downstream 553610 23004986 ~ 23005812 (-) True G123308
TU142062 other downstream 1181262 22376153 ~ 22378160 (-) True G122972
TU141994 other downstream 1403693 22149517 ~ 22155729 (-) True LOC110537842
TU144219 other upstream 295968 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 551296 24159167 ~ 24161443 (-) True LOC110538705
TU144410 other upstream 661355 24269226 ~ 24270136 (-) True G125003
TU144456 other upstream 716709 24324580 ~ 24324836 (-) True G125043
TU144590 other upstream 923791 24531662 ~ 24534529 (-) True LOC110538887

Expression Profile