RNA id: XM_036943696.1


Basic Information

Item Value
RNA id XM_036943696.1
length 2284
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC110534567
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26794149 ~ 26814659 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATCCATCAGCTCAAACTGAAGGAGGAGAAGCCAACAGGGCCAGTAAAGTCAAGTTGTTAGCTAGCGTTGCTAAGATGGCATATGAATGAAAAGTGAAACAGAAACACATATATTTTGAAAGTAGTCACATAAGTTAAGCATTAGTACGGCACATCGTCCATATTCTTGAAATCGTGTTAGTGTGACAGCTGAGCACCAGAAACAACAAGCCATGCTGACGTGTGAGATTTGTGGCAAGGAATTGGTGTTGGACGAGGACATGAAGACCCATCTCCTCCTGAGCCACATGGAGAATGACATGGGCTGCCCCCTCTGTTCCTGGTCCGGAGTCACCTACAACGAACTCCGCTTCCACATCAATACCACACACAAAGAGAAGCAGGACCATGACGAAGCAGAGGGTAGAGGTGGTCACAGTCTTGTCAGGCCCAGCTCAAGTCCTACTCCCTCTACCACCATAGTGGACAGTCACTGCAAACAAGCCATTGGTTTGTCTAGGTCTGAGGGTTCTGAAAAAGGAGTAGCCAATGGGAACAGGTTTGACACCATTGGAGGAGGGGTCTCACTCAGGACATCCAATAGCACACTGGAGTCTAAGGAGCGAATGACTGTATCCCCCCAAGCTTTTAGTAGGGGGGAGTCCGGTGGAGGGCGAGCAGTGGCCATTGTTGAACCCACCTCTTCAATGTCTACGGGCTTTCTGAGATCAGCTCAGGACTCCAGTAGGCCTACTAGCAGACACTGTATTGCTGAGGACTCTGTGGGAGTGGGATCCGCAGAGCACACCACAGTCAAACAGAAGCGTTTCTCCTCCCCACTTAAAGAGAAGCAGTTTTCCTGTCCTATGTGTGCTCTGGTCTGCACAGATGCCTTCATCCTACAGGAACATGTTGAATTGCACTTGCTAGAAGAGAGCCCAGCTGAAGAGGCTGTCCTGGGGGCCACATCATCAACCGAGGCAGCATCATCCAGCAACAGCTCAGGTGGGAAGAGTTATGAGTGTCCCCTGTGTTCTGTGGTGTGTGGAGACTGCTACTCCCTACAGGAACATGTGGAGCTGCATCTTGACAATGGCACAGTCACTAGTGCAGtgagcCCTGGCTCAGACCTGAGGCTGGCCAGACGgctgcaggaggaggagaagcagaggaggaaggagCAGGAGGCcaagagggaggcagaggagttCAAGAAGCTGCAGaggcAGTTTGGTGTGGATGGGAGGGGGGGCTACcgcagacagatggagaggaccATGGAGAAAGCCGTGTCTCGAGGTGTCATGGTGCCTACTGACTTCCACAACAAGAGAGCAGAGATGATGGAGGCTCTGGCCTCAGGGGTCGACGATGGCAGGACCAGAacgcaggGTGTGCTGGGTGCTCTGTATGTTTACTACCAGAGGGAGGCCAGAGACTGTGTCCACGTGTGGCTGAGTGCTGACACAGACCACTTCTGCTCATCAGAGGGGGATAAGGGCTGGGGTTGTGGCTACAGAAACTTCCAGATGCTCCTGTCTTCTCTGCAAAGAATGGAGCCCTACACTACCTGTCTCTCAgAGGGGTCAGTACCCAGCATCCCACAGGTGCAGGTGTTGATAGAGGGGGCGTGGCGGGAGGGGTTAGACCCACAGGGTGCCACCCACTTTAACCAGCGACTACAGGGCACACGGGCCTGGATAGGAGCTACAGAGATCTACGCTCTCTGCACCTCCCTCAGAGTCAGTGCCCGTGTTCTAGACTTCCACCAGCCCACGGGTCCAGGAGACACCCACCCCCGCCTCTTTGACTGGGTGAAGCAGTACTTCTCTCAGACTGCCACCAGAGGCGCCAGACTACCGCCCCGGGTGGTGCAGACCACACAGCCGCCCCTCTACCTCCAGCACCAAGGCCATAGCCGCTCTATAGTAGGAGTGGAACAGAAGAAGAATGGCAGCCTGTGCCTGTTGCTCCTGGACCCTGGCTGTTCACCTGGAGATGTGAGGAAACTGCTGAGCCAAGATGGCTCCACTGTTAGCACAGCTGTCCGCCGCATGAGGAAGTTCTCTGGCAACCTGAAACATAGGCAGTACCAGGTTGTGGTTGTAGATGGCATGCTCTCCCCCGAGGAGAAACAGaCCCGCGTTCTCAACTCAAGAACACTCCAAGCCGAGAGGATCCCTTGATGCTGGAATGCAGTTGTCGCATTCATTTTACTGTGAATGTAAATTTGTAACTGCCAAAAACATTTCATGTTGAATTTTCTTTGACATTTTATTAAGGTAATAAATGATGTATTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146866 lncRNA downstream 56370 26736841 ~ 26737779 (-) True G127268
TU146714 lncRNA downstream 109511 26684168 ~ 26684638 (-) True G127131
TU146641 lncRNA downstream 145242 26642188 ~ 26648907 (-) False LOC110539285
TU146638 lncRNA downstream 165546 26626830 ~ 26628603 (-) False G127074
TU146922 lncRNA upstream 7303 26820766 ~ 26822599 (-) True G127307
TU146928 lncRNA upstream 19709 26833172 ~ 26854454 (-) True G127313
TU146961 lncRNA upstream 64987 26878450 ~ 26914822 (-) True G127342
TU146941 lncRNA upstream 88560 26902023 ~ 26903399 (-) True G127323
TU146992 lncRNA upstream 122009 26935472 ~ 26935844 (-) True G127372
XM_021556160.2 mRNA downstream 7165 26781796 ~ 26786984 (-) True LOC110485095
XM_021556163.2 mRNA downstream 7179 26781796 ~ 26786970 (-) False LOC110485095
XM_021556158.2 mRNA downstream 7183 26781796 ~ 26786966 (-) False LOC110485095
XM_021556152.2 mRNA downstream 31515 26760385 ~ 26762634 (-) True LOC110485094
XM_036943665.1 mRNA downstream 67989 26683358 ~ 26726160 (-) True lars2
XM_021556185.2 mRNA upstream 21201 26834664 ~ 26839122 (-) True LOC110485107
XM_021556194.2 mRNA upstream 36280 26849743 ~ 26858369 (-) True LOC110485118
XM_021556206.2 mRNA upstream 44948 26858411 ~ 26863425 (-) True LOC110485134
XM_021556237.2 mRNA upstream 97935 26911398 ~ 26917136 (-) False LOC110485162
XM_021556245.2 mRNA upstream 97935 26911398 ~ 26917150 (-) False LOC110485162
TU146643 other downstream 131135 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 232022 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 2017522 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 2259620 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 2469313 24324580 ~ 24324836 (-) True G125043
TU147564 other upstream 457797 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 952694 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 1283219 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 1496856 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 1663723 28477186 ~ 28477831 (-) True LOC110534614

Expression Profile