RNA id: XM_021556194.2


Basic Information

Item Value
RNA id XM_021556194.2
length 2052
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110485118
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26849743 ~ 26858369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAACATTTTCAAGTGTTAACCAATATATAAAAACTGTTTCACaataccaccacaccaccaaGGCATAAAAGTAGCCACAAAAACCGAGAGCAGCAAAATTGCAGTTCTCTCTTTATGTCTGGCACATGGACACTCTTTTCGTCGGCATTATGACAAAGTTCATTGTTGTTGCATTCTTGTTACTCCACACATCGGTttcctcttcgtcctcctcttcctcttctcctggagCAGCAGGCATGTTGAAACAACTGTTTCAATACATAGATGACCACCAAAATCAGTTTGTTCAGAGGCTGAGGGAGTGGGTTGCTGTTCAGAGTGACTCAGGAGATCACACAAAATGGGGAGAAGTTGAAAGGATCCTGAACATGACAGCAGTGAGGATCCAAGAGATGGGAGGCACAGTGGACATTGCAGATGTAGGCACTCATCAGCTGCCCAGTGGGGAGACTGTGTCACTTCCACCGGTGATACTGGCTGAGTTTGAGAGGGACCCAAAGAAAGCTACTCTCTGTATCTACGGCCATGTGGATGTCCAGCCAGCCAAGATGGCGGATGGCTGGACCACTGACCCCTTCAATCTAACAGAAATCAAAGGTAACCTGTATGGGCGAGGGGCCACGGACAACAAAGGGCCGGTCCTGGCCTGGCTTCATGCTGTTGAGTCCTACCAGGCCACAGAGAAGGAGATACCAGTGAATATAAAACTCATCATTGAGGGTCTGGAGGAGGTGGGCTCATACGGTCTGTTGGAGTTGACCAGGAAGAGAAACGACAGCTTCTTTGCAGATGTGGACTTCATAGTGATCTCTGACAACGTGTGGGCGACCAGAAACCCAGCCCTGACCTATGGAACCAGAGGGAGCAGCTATTTCTTTGTGGAGGTTGATGGCCCTAAACTGGACTTCCATTCTGGAGTGTATGGGGGTTCTATCCAGGAGCCCATGTCAGATCTGATAGCCTTACTGGGAAGTCTGTTGGACCACACAGGTAAGATCCTGGTTCCTGGGGTCACTGATGATGTCGCGCCCCTCACTGAGGATGAGAGGAAGCTCTATGACAACATTAGCTTTGACCTGGAGGAGATGAAGAGTGTGGCTGGGGTCAAACACTTCCTACAGGACACTAAGGAGGAAGTCCTCATGGCTCGATGGCGTAACCCATCCTTGTCCATCCACGGGATCCAGGGGGCCTTCTCAGAACCAGGCACCAAAACTGTCATCCCCAAACAGGTCACAGGGAAGTTCTCCATCCGACAGGTCCCCAACATGGACCCTCCAGATGTGGAGAGGAAGGTGAAGGAGCACCTTCAGCAGGTCTTCTCCACTCTAAAAAGCCCTAACAGGCTGAGGGTGACCGCAACTGTTGGGGCTAAACCATGGGTGGCTAACCTGAAGAACCCACAGTACGTTGCCGGACAAAGGGCAGTCAGAGAGGTGTTTGGAGTGGAACCGGAACTGATCCGTGAGGGCTCCACCATCCCTATCGCTCAGAACTTCCAAGAGGAGACAGGCAAGAGTGTGATGATGCTGCCTATAGGAGGCCATGATGATGGAGAGCACTCTCAGAACGAGAAGATCAGCAGGTACAACTACATTGAGGGGACGAAGCTGTTTGCTGCTTATTTTTATGAGCTTTCACTAGTAAAGTAGGTGCAGGATATATTTCTATCCAAGCTGTGACCATGATAAATATGCTGTAGGGGACAGCATTGTGCTACTTGAGTGCCCGGGTTTCCGTCAATAATGTTTGATTCCATGCTGTGACTCCACTCTcccagggtgtctcagggggagtgggaTATGCAACCAACACATGTCCATTTCACTACACAATGGATAGgttacacacttgtacatgtgtgtaaCAGGAAAAATATAACCACCCCTATTCGACCTTTGAACAGGTATTATTACATAGCCTGAATGAGGGTTATTGCATAAGTACAACATTTTAGCCCCCTCTAGAATAACTATttctactatttgtatttgtTGCATGTATTCTACTGTGGATTAACTAATAAAGGGGGCAAAGACaaatggtga

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K05604 CNDP1; beta-Ala-His dipeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146922 lncRNA downstream 27144 26820766 ~ 26822599 (-) True G127307
TU146866 lncRNA downstream 111964 26736841 ~ 26737779 (-) True G127268
TU146714 lncRNA downstream 165105 26684168 ~ 26684638 (-) True G127131
TU146641 lncRNA downstream 200836 26642188 ~ 26648907 (-) False LOC110539285
TU146637 lncRNA downstream 221140 26626946 ~ 26628603 (-) True G127074
TU146961 lncRNA upstream 20081 26878450 ~ 26914822 (-) True G127342
TU146941 lncRNA upstream 43654 26902023 ~ 26903399 (-) True G127323
TU146992 lncRNA upstream 77103 26935472 ~ 26935844 (-) True G127372
TU147002 lncRNA upstream 84394 26942763 ~ 26943032 (-) True G127382
TU147011 lncRNA upstream 90179 26948548 ~ 26948780 (-) True G127391
XM_021556185.2 mRNA downstream 10621 26834664 ~ 26839122 (-) True LOC110485107
XM_036943690.1 mRNA downstream 35084 26794149 ~ 26814659 (-) True LOC110534567
XM_036943698.1 mRNA downstream 35090 26794149 ~ 26814653 (-) False LOC110534567
XM_036943696.1 mRNA downstream 36280 26794149 ~ 26813463 (-) False LOC110534567
XM_021556160.2 mRNA downstream 62759 26781796 ~ 26786984 (-) True LOC110485095
XM_021556206.2 mRNA upstream 42 26858411 ~ 26863425 (-) True LOC110485134
XM_021556237.2 mRNA upstream 53029 26911398 ~ 26917136 (-) False LOC110485162
XM_021556245.2 mRNA upstream 53029 26911398 ~ 26917150 (-) False LOC110485162
XM_021556230.2 mRNA upstream 53031 26911400 ~ 26917136 (-) True LOC110485162
XM_021556296.2 mRNA upstream 326141 27184510 ~ 27202253 (-) False LOC110485234
TU146643 other downstream 186729 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 287616 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 2073116 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 2315214 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 2524907 24324580 ~ 24324836 (-) True G125043
TU147564 other upstream 412891 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 907788 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 1238313 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 1451950 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 1618817 28477186 ~ 28477831 (-) True LOC110534614

Expression Profile