RNA id: XM_021556296.2


Basic Information

Item Value
RNA id XM_021556296.2
length 2664
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110485234
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27184510 ~ 27202253 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGGGGGCAAGTCTAATgcatagagagagcgagaaagctaAAGAACATCTGCATATTCTCTGACTGACTGCACGACCACAAGTCACCAGCTTGACTCACTCGCCCAGGTGGATTCCCTTTTCCTGCTTTACTTATTTTTCACAACATTTAATTTAGATTTACTGACAGATCTTTTCACAAAACTTTATTTTGATATTAAGGATGAGGACTCTGGCCTTCGCGCTCTTTTGCCTGCTCTGCTGCGATGCAGTCAGAGTGGACCACAGAGACAGACCCCGTCCCAGACCATCCGTCCTGTCCAGAGGACGCAACGACTCGGCCGTCCAGTCCAACTCAGTGGAGAGCCTGTGTAAAGGGAAGCCCCTGGATTTTGTGTTCATCATCGATAGCTCCCGCAGCGTGCGTCCCAGCGACTACGAAAAGGTCAAGATCTTCATCACCAACATCCTGGCCTTCCTGGACGTGGGGCCGGAGGCGACGCGCGTCGGGCTGCTGCAGTACGGCAGCGTGGTGCAGAACGAGTTCTCCCTCAACACCTACAGCAGCAAGGCAGATGTGGAGCGGGCGGTGAAGGCCATGGACCACCTGGCCACCGGCACCATGACCGGCCTGGCTATCCAGTACACCATGGAGACAGCCTTCACCGAGCCAGAGGGCGCCCGACCCGCCGACCTGCACATCCCCCGCATCGCCATGATCATAACGGACGGGCGCCCCCAGGACACGGTGGAAGAGGTGGCGGCACAGGCCCGGCAGGCAGGCATCCAGATATTCGCCATCGGAGTGGGCAGGGTGGATATGAACACGCTGCGGGTCATCGGGAGTGAGCCCCACTCGGAGCATGTGTACCTCGTGGCCAACTTCAGCCAGATAGAGACCCTCACCTCCGTCTTCCAGTCCAATCTGTGTGGAGgTATAACAGATCTGTGCTCTGTGATGGACCATCCGTGTGATCACCTCTGTGTGAGCACCCCAGCCTCCTACATGTGCCGGTGTAGAAAGGGTTACACCCTTAACTCTGATGGCAAGACCTGCCACGCGGAAGACCCGTGTGATGTGGTGGACCATGGCTGTGCCCACATCTGTGCCAAGGTGCCAGGGGTACTTGGCTACGAGTGTCACTGCCGGCTTGGGTATGAACTCAACGAGGACGAGAGGACGTGCCGAAGAATAGATTACTGTGACCTGGGGAACCATGGCTGTCAGCATGACTGTGTCAGCTCTCCTGAGTCCTACGTCTGTAGATGCACGAGGGGCTATGTTCTCAACCGCGATGGCAAGACCTGCAGCAAGAttgaccactgtgctcttggcgACCACGGCTGTGAACATGAGTGTGTGAACACTGAAGATGTATTTTTCTGTAAATGCAATGAAGGCTACATACTCAGACCTGATAATAAAGCCTGCAAAAAGCTTGATCCCTGTTCCCTTGGTAACCATGGGTGTGAGCATGACTGTGTGAACACTGAAGATTCATTTGTGTGTAGATGTCGAGAAGGCTACAAACTCAGACCTGATCACAGAACCTGCCAGAAGGCAGTGTGTGGAGATGGAGTGATGGATCTGGTATTTGTAATTGACGGCTCTAAGAGCCTGGGACCGGCCAACTTTGAGCTGGTCAAGCAGTTTGTGAACGGCATCGTGGACTCTCTGGACGTGTCCGGCACGGGCACCCACGTGGGGCTGCTGCAGTACTCCAGTAAGGTCCGCACAGAGTTCATCCTGGGTCAGTATACCTCAGGCCGGGACATCAACAGGGCCGTATTACAGATGCAGTACATGGGCAGAGGATCCATGACGGGTGCTGCCCTGCGTCACATGTTTGAGTACAGCTTCTCTGCCAAGGAGGGGGCCAGGCCCGACATACCACGGGTCAGCATCGTGTTCACCGACGGACGATCCCAGGATGATGTGTCGAAATGGGCCTCTAAGGCAAAGGATGCTGGTATCACGATATATGCACTTGGTGTTGGTAAAGCCATCGAAGAGGAGCTCAGGGAAATTGCTTCCGAGCCAGATGATAAGCATTTGTACTATGCTGAAGATTTTAGCAACATGGGAGAAATTACAGACAAATTGAAGTCACGGATGTGTAAAGAGAAACCCTCCCCTCAAGATATGTGTAAGTGTGAGAACGTGATGCTCTTCCAGAGGCAGGTCAACGAACAGCTTAGGAGACTGACCCAGAATATTGAGGTTGTGTCAGAAAGGATGGAGACCCTTGAGAATCAGCTTGGACACAAATGAAGGACAAAGACATTGTTTTCATCTGTTCGTCCTCAACTGGCCTGCGGTGCAAGAGCATTACTAAACTTCAAGGGATATCTTTAAGCTATTTCAACAAGCTACACTGAAATATAATATGGAATATTTTCTACAGTAACTGCTATTTATATTCTGAACAAAACTATGCATTTATGCATGTGGCTGTGGACTGGAGTAAGTGAAGCCAAAAATACTGTATATCTTTGCTACATTCAGgtatcaaaatgtgtttatttttaaaAGTAAAATGTTATTTGGCAGATAACTGCAATTTATAGATACAAATATAACTCGTATAAGATACAGTACATTTTATAATGACAAATCAAAGTAAAATTACTTGTATTTCAAGCTAAATACTTTCTATTGCTGTTGTGAATAAAATCCCTGTTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147236 lncRNA downstream 43790 27140502 ~ 27140720 (-) True G127607
TU147225 lncRNA downstream 53617 27130539 ~ 27130893 (-) True G127596
TU147208 lncRNA downstream 65837 27118446 ~ 27118673 (-) True G127579
TU147131 lncRNA downstream 139818 27044416 ~ 27044692 (-) True G127504
TU147098 lncRNA downstream 166063 27018105 ~ 27018447 (-) True G127477
TU147608 lncRNA upstream 87991 27290244 ~ 27293324 (-) True G127945
TU147558 lncRNA upstream 119221 27321474 ~ 27331163 (-) True G127905
TU147658 lncRNA upstream 165638 27367891 ~ 27369610 (-) True G127991
TU147670 lncRNA upstream 187335 27389588 ~ 27389825 (-) True G128001
TU147676 lncRNA upstream 188616 27390869 ~ 27392647 (-) False G128003
XM_021556245.2 mRNA downstream 267360 26911398 ~ 26917150 (-) False LOC110485162
XM_021556237.2 mRNA downstream 267374 26911398 ~ 26917136 (-) False LOC110485162
XM_021556230.2 mRNA downstream 267374 26911400 ~ 26917136 (-) True LOC110485162
XM_021556206.2 mRNA downstream 321085 26858411 ~ 26863425 (-) True LOC110485134
XM_021556194.2 mRNA downstream 326141 26849743 ~ 26858369 (-) True LOC110485118
XM_021556532.2 mRNA upstream 937 27203190 ~ 27215402 (-) False LOC110485460
XM_021556536.2 mRNA upstream 937 27203190 ~ 27215402 (-) True LOC110485460
XM_021556485.2 mRNA upstream 13719 27215972 ~ 27231125 (-) False LOC110485403
XM_021556499.2 mRNA upstream 13719 27215972 ~ 27231125 (-) False LOC110485403
XM_021556518.2 mRNA upstream 13719 27215972 ~ 27231125 (-) False LOC110485403
TU146643 other downstream 521496 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 622383 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 2407883 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 2649981 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 2859674 24324580 ~ 24324836 (-) True G125043
TU147564 other upstream 69007 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 563904 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 894429 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 1108066 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 1274933 28477186 ~ 28477831 (-) True LOC110534614

Expression Profile