RNA id: XM_021556536.2


Basic Information

Item Value
RNA id XM_021556536.2
length 2159
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110485460
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27203190 ~ 27215402 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATGGGAACATTATTCTCGAAACAACTAGTTACATCACCGGCTCTTGATCCTATCCAGCTCAGGTCACATGCTCCAATGTTTGCTACTTGCCTGAGTTGATCGCTAGAGCCGGCGTGAGAGTGTTATCGCTAATTGCAGACGACACCGCGCTTGCCGGAGAAGAAATTCACTTCGATCTATTTGGATTGTTTATCATTAACAGTTAGATATAGATATCTGTGAAGTGCCTCATCCTTGGATTGTAAAATATGATTTCCCCGTGGGACCGATGGCATTCCACCAGATGCTGCCTGTGCTGTCATGTCCGCACGGGCACTGTTATCCTGGGGGTTTGGTATATGCTGATCAATGCGGTGGTGTTACTCATCCTCGTCACGGCCCTGGGTGATCCTGACCAGTACCATCTGACCAGCGCTGAGCTGGCTAACGACTTAGATGACATGGATGACGCCAACATGTGTATTGCTTCAGCGATCTCGTTGCTGATGATACTAATTTCTGGGATGGCGACCTACGGTGCGTATAAGcaacaTGCTGCTTGGATCATCCCATTCTTCTGCTACCAAGTCTTTGACTGTGCACTGAACACCCTGGTGGCTGTTAGTATTGTGGTCTACCCCAACACCATACAAGATTACCTCCAACAGCTGCCTGAGAACTTCCCCTACAAAGAGGACATCATGGCCATGAGCAATGTGTGCTTGGTCTTCATCGTGCTCCTCTTCATCGGATGCATTCTCACCTTCAAGGCGTACCTGATAGCGTGTGTGTGGAACTGCTACCGGTATGTGCGTGCAAGAAGCACCACAGAAGTCCTGATATACGTCACTACTAATGACACCACGGTACTGTTACCCCCATATGATGACACCATGTCTATTCCATCCAAGAACGCTCCTCCCCCCTATGGGGCACCCTACATAGCATGAAGAACCTGGGCCGCTGTTCTGCTGACCAACTGGACCCCTTGTTACTACAGCAACCTGACATTCCAACCAGACCTGGGTCAACAAataatatttgttttctttccaatACACTATGCATTTTATAGTTGGCATTTGATAACTGTCACACTGGGTGTGTGGTGTTAGCAGTAGTTTAATAAAgtttacaaatatatatactttGACCCAGGCCCCAATACCACTGATTATTTCCAAAACATTTAACCTGCACACATTGACTTACTTACCTGTTACTGTGATACTGTTTAACATTATACTGTTTATTTGGAGTTATTTATTTTCACTGATCTACAGTTGAAACATCGAGCAGGAAAGAGTTCAAATATGAGCGCGCTAGTAGTGTGTGTAATAGAAGATATATATTTTCTTGCTTGTACTAAACTGTACTTCTACTTGTTCTCTACTGTCAGTCCTAGTCCAAAGGCCACCCACCAGAAACGGGTTTCCATGGTCTATGAAGCGAGTACTTGTGAGAGACCTACACAAATCAAATCAGGCACTgattatatataaaaaatatatatattgcccATGATttaggctggtcccagatctgtatgtGCATTGTCATGTATGGCATGACGATTACAGTCAGAGAAGTTGGCTAAAGCACACACAGATCTGGAAACAGGCAAGTGGGGATTGTATCCTCGACTCAAAATATTTATTTGTTCTGCCCATgatcactgttcgttgttggatTTCCTTTACAAACAACTTCCTTTCTGATTAGGGTGCACTGAGAGATGTATGAAGTGTTGCTATGCGCGGAAGGATCCCAAAGATTTAAAGCACCTGCCTGTAATCTAACAGATGATCGAAGAGCAGAAGTCATATCACCAAGTTACTCGTACGttattgtttagtgtgtgtagAAAACTGTCATTATCCTGAATTATtacaacaggacagtgttgagTTTACCTTTATTTTAAAGGTGGAGTTTTAGGACTTGTACATTTGATCTTATATCTGTGTTGATTCCAATAAAGTAAAAAGTGGTGGTCCTGTTTTTTGAATTAAGCCAATGTAAGCGGACTGGTCTGCTCTGCTGGATGCAGTTATTGGCAAGCTGTTCCCCAGACGGGGGATGTCCTCTGAGGACTCCGTCACATTTAACCGTCTGCTGCTGCAGcataaaaatacaatatttatttgtccattaaaaacacatttaattgACGGACA

Function

GO: NA

KEGG:

id description
K12387 LAPTM; lysosomal-associated transmembrane protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147570 lncRNA downstream 17543 27184532 ~ 27185647 (-) True LOC110485234
TU147236 lncRNA downstream 62470 27140502 ~ 27140720 (-) True G127607
TU147225 lncRNA downstream 72297 27130539 ~ 27130893 (-) True G127596
TU147208 lncRNA downstream 84517 27118446 ~ 27118673 (-) True G127579
TU147131 lncRNA downstream 158498 27044416 ~ 27044692 (-) True G127504
TU147608 lncRNA upstream 74842 27290244 ~ 27293324 (-) True G127945
TU147558 lncRNA upstream 106072 27321474 ~ 27331163 (-) True G127905
TU147658 lncRNA upstream 152489 27367891 ~ 27369610 (-) True G127991
TU147670 lncRNA upstream 174186 27389588 ~ 27389825 (-) True G128001
TU147676 lncRNA upstream 175467 27390869 ~ 27392647 (-) False G128003
XM_021556296.2 mRNA downstream 937 27184510 ~ 27202253 (-) False LOC110485234
XM_021556245.2 mRNA downstream 286040 26911398 ~ 26917150 (-) False LOC110485162
XM_021556237.2 mRNA downstream 286054 26911398 ~ 26917136 (-) False LOC110485162
XM_021556230.2 mRNA downstream 286054 26911400 ~ 26917136 (-) True LOC110485162
XM_021556206.2 mRNA downstream 339765 26858411 ~ 26863425 (-) True LOC110485134
XM_021556485.2 mRNA upstream 570 27215972 ~ 27231125 (-) False LOC110485403
XM_021556499.2 mRNA upstream 570 27215972 ~ 27231125 (-) False LOC110485403
XM_021556518.2 mRNA upstream 570 27215972 ~ 27231125 (-) False LOC110485403
XM_021556527.2 mRNA upstream 570 27215972 ~ 27231125 (-) False LOC110485403
XM_021556479.2 mRNA upstream 570 27215972 ~ 27231126 (-) False LOC110485403
TU146643 other downstream 540176 26651376 ~ 26663014 (-) True LOC110539285
TU146650 other downstream 641063 26561614 ~ 26562127 (-) True G127083
TU144748 other downstream 2426563 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 2668661 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 2878354 24324580 ~ 24324836 (-) True G125043
TU147564 other upstream 55858 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 550755 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 881280 28096682 ~ 28149986 (-) True LOC110485663
TU149362 other upstream 1094917 28310319 ~ 28310732 (-) False G129582
TU149442 other upstream 1261784 28477186 ~ 28477831 (-) True LOC110534614

Expression Profile