RNA id: TU166417


Basic Information

Item Value
RNA id TU166417
length 1629
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G144968
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42640499 ~ 42642693 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctcactcactcactcactcactcactcacacacacacacacacacacacgtaaagggATAACACTACTTGCTACAAACGGGCCTTTCCATTCTGTTTCAGCAGCTTTCTGTATTCGTATGGTGTTAATACTGAAGTGAAAACGAATGCattgtattattgttattatttcattaaacaatgcagctgtttttattacccaggccaaaactccatcccaccaaaacagactgaaaagcgctgtcttttcaaacagcgcttacactaaaagggcattatcatcatttacACAATATCATTCCaaactcatagtgtggaaatgtatataaaacacaggaatatCACGTTTTGACTTCATTTGGGCCTTTAACATTCCAAGTGGCAGAAACTGACAGGACTCGAGACCATAGAGCTAAATAGACAGCAGGATGAATAGATACAGCACTCTCTAGTGGTGAGATACAAGAGTCGGCTCTACTCCGACAAGAATGTTCCATCTCCAGTTCCTTTTGCGTATCCCAATCTCCTTTACTAGAGTGAAGTTAGACACAGAGTTGATGGAAAGGCCAGTGATTATGGCTGATGCTCAGCAGCAAGCCACAAACCATAGGACTACTGGTAGAATAGCCCACCGTTAGTAAGACACAGACTAGAGCTGCCACCCAAGTCAAAGATTCTTTATATATCACTCTTTACAATGTGTCAAAATGACTGACCTCAGTTCTCTCTAGTGTTTTCATGTTTCTGCTGCCATCATCATCGTCGTCTCTCTTTCACTAGTTACATTTCTAAAGAAACAGCCATGTTGCCTGTATTCCATGGACAGACACTCCACTCACTGGTTCAACCAACAATCTCCCTCATGACGTTTTACACTAGCCTGTAGCCTTGGACAACTGACACAAATAAGGCAATGTCTGTGATAGTGCCATATTGGCAATGTCACAATCACTCGGGGTGAGGAAATCACATTGTAACACATGTAACACGGGATTCGATTTATACGCTCTGCATACAAATACACGGTTTTGTCGGAGCGCACTGATATTACATTGTTAGGATATAGTTTTCAGTCATCATGGAATATAACTGCGCCACCATGTGTGGGCACAGATCTCTGGACGAGAGGGAGGGGCAGCAGGAGAAGCGAGAACTGTGCCTCTCTGTTCCGCAGCTCTATGATGCCAAGCCAGATAGCAGCACCCTGACTAGTTTGAAGTTCCCGGCTGTCTGACTGCCTCAGCCAAACCCACCCCACCTGCCTTGGTAAGGATGGGTCAAGGGTTGGGAGGTTTGGGACTGGAAGGGGCAGGATTAGGAGGGTCAGGACTAGGAGGGTCACACTTAAGCTGCGGCCCATTGTCCGAGCCCGTGCCCACGTCCGAGTCGAACAGCGAGTGGTCCGTATCGggggagtgagtgtgtgagtgtgtgtgtttgtcagaggCTTCGCTCTCCTCCATGGTGTCTGTCCGGGAGAACAGGCCAAAGTCCATCAGGCCTGTGGAAGAGCCCTCGCTGCTGTCAGTGTCTGCTCCGTCATAGTACACATCCTCTATGTCCACGAACCACTCAGGCCAGAACTTTCTCCGCATGCGCTCACAGAACATGGCCAGGTTGATGAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166344 lncRNA downstream 47895 42588558 ~ 42592604 (-) True G144941
TU165997 lncRNA downstream 226497 42413717 ~ 42414002 (-) True G144654
TU165964 lncRNA downstream 242349 42397901 ~ 42398150 (-) True G144621
TU165952 lncRNA downstream 251662 42388636 ~ 42388837 (-) True G144609
TU165947 lncRNA downstream 253925 42386343 ~ 42386574 (-) True G144604
TU166453 lncRNA upstream 38715 42681408 ~ 42683345 (-) True G144995
TU166473 lncRNA upstream 75041 42717734 ~ 42717959 (-) True G145015
TU166477 lncRNA upstream 78027 42720720 ~ 42720929 (-) True G145019
TU166480 lncRNA upstream 81407 42724100 ~ 42726203 (-) True LOC110490045
TU166491 lncRNA upstream 88675 42731368 ~ 42731714 (-) True G145025
XM_021563025.2 mRNA downstream 123218 42510322 ~ 42517281 (-) False LOC110489980
XM_021563035.2 mRNA downstream 123218 42510322 ~ 42517281 (-) True LOC110489980
XM_021563013.2 mRNA downstream 138602 42495466 ~ 42501897 (-) True LOC110489971
XR_005036767.1 mRNA downstream 300026 42322365 ~ 42340473 (-) False LOC118940237
LOC118936750 mRNA upstream 43446 42686139 ~ 42687000 (-) True LOC118936750
XM_021563153.2 mRNA upstream 81385 42724078 ~ 42727549 (-) False LOC110490045
XR_005036801.1 mRNA upstream 136717 42779410 ~ 42792775 (-) False LOC110490051
XR_005036802.1 mRNA upstream 136717 42779410 ~ 42792775 (-) True LOC110490051
LOC110501576 mRNA upstream 279975 42922668 ~ 42962273 (-) True LOC110501576
TU165059 other downstream 910077 41714546 ~ 41730422 (-) True LOC110489860
TU164135 other downstream 1776778 40863214 ~ 40863721 (-) True G142918
TU163223 other downstream 2399095 40224622 ~ 40241404 (-) False LOC110489653
TU166468 other upstream 64125 42706818 ~ 42707279 (-) True G145010
TU167289 other upstream 628024 43270717 ~ 43272516 (-) True G145767
TU167341 other upstream 730147 43372840 ~ 43392129 (-) True LOC110490183
TU168015 other upstream 1133370 43776063 ~ 43783719 (-) True LOC110490298
TU168885 other upstream 1792097 44434790 ~ 44436117 (-) True LOC110490352

Expression Profile