RNA id: TU243151



Basic Information


Item Value
RNA id TU243151
length 6647
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id G214014
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 102749682 ~ 102756525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tatttatttgcacttttcaatTGTAAGTAGTGGACAGAGATAACAGTTtaattattaaaaaaatacaaatcacaGTACAGCgcgaatgaaaaataaaacagtgGAGCCGAGGCATAAAGTGATCGTTGACGTAACTAATTACATAACAGTAATAGtaaggggatacagacagagcagACAAGGCTAATTGGAGATGATGACCTCTGTAACCTCCTCATTGGCACTGCAAGCCTGACAGACACAGACTGGGTCATcctttctctatatagtgcactactatgggcccAGGGTCACTCTATTCCCCTACGGGCCCAGTGTCACTCTATTCCCCTACGGGCCCAGGTCCAAAGTAGTGCtccatataaggaatagggtgccatttgggatgcacccaggGACTACAACCTAAAGCAGGGCTGTGTTCAGCAGGGCTGTGTTCAGTAGGGCTAGCATGCTAGTTGTTCCTgtggacttccagtcattgcactaacgcGACTTCGCATTGGCTAACTTCcgtcatactggacacagagacataaaatgtttatccacgagttcatctctgggtcagtagataaagggcctcatctgactctgggttaGTAGATAAAAgggcttcatctgactctgggttaGTAGATAAAAgggcttcatctgactctgggtcagtagttaaagggcctcatctgactctgggtcagtagataaaagggcttcatctgactctgggtcagtagttaaagggcttcatctgactctgggtcagtagttAAAGGGCCTTGTTGCCAACATCCAGAAGAATCCCTTTTAATTCATGGAAGTAGCAGAGACTTATTTGTAGTGCTCTCAATTTGATAGGGGGTGTTTGATAGGGGGCAATGAGACACACTTTATGTGAAGTGGGATACTAGGCTTTATTAAGTAAATAGACAGTGGCTCCCTCTTATCCACACCTGCAGCTGATCTAAGTCTGCAGACTGTGGTGTGTTGAGTCACTTGGAGGGAACCTGCCAACCAGCCTGATCAACTTGGCCAGGAACCAGTCCTGTCCACTAACAGTTAACCCTTATCCTTAACTGTTTGAAACGTCCCCTTCAAAGGGCTGACAGAGTTGGACATCCCAAGGATCCTGTTTAGATCCTTGGGTCCACTAATCCAGAGAGCTAGCTAGGTGAGCCGGCCAGGCTTGAAGAGAAGGGGAGGTGGTTTCTGAAAACTCCCAACCAACATgacattctaccataaaggcactGAAACACTACTCACTCACAACTTGCAACATAAAAGGAGCCTACAGCCACGTCTCAGGGTTACCATCAGCGTTGGGCCATTTCCATTTTAATTCAGAAAGtaaaaccaaattccaattccaaatgtTCCTCGTTGAAgataattggaatttcagtgtacttcctgaattgactggaactgATCCTAATCCTGGCATAGAGCatgtttaaaaacaaaacaaaagcagAAATGTATGAATGAATCAGTCTTATAAGACAGTCTGTTAGGCAGTCTAACTGTAGTCTGGTCTCTCCAGATAGTGGTTATGTATGTGCGATTACTTGTTCCCATTGACACCAAGGTAAACCATGGTTAGGCTgaatcccagatctgtttgtgccgttTTGTCATAACGCCCATGTCCCTCAAATTGaaatctggacctcaaagccagttgaACTGCTATGTATCATTCTTCCCCTCTAGTTAGGGACTCATTTCGACCTGGGACACcaagggtgtattcattccgccaaacaggtagaacagaaaagcagcagTAGTCCGGACGTCGTAGGGTAATAACCCCGTCTTATGATAATGACAGAGTTGGCAAGACCACACAAACAGAGCTGGGAATCCGGACTCATGAGCAGTGGCATCACTAGACTTTATGCTACCATCCTTCACCATGACAACAAGCTCCACCTGGCTCCCAGGGATTTCTGGAAAATGTAGGGACATTTTGCAACCCCTTCAATTGTGAATAAATAGACGAATTGAAGGCAGGAAGCTCAGAAGGAGCACTGATCCCTGGCCTATCATTAGCATTATAGCATTACTACCACTGATCCCTGGCCTATCATTAGCATTACAGCATTACTACCACTGATCCCTGGCCTATCATTAGCATTACAGCATTACTACCACTGATCCCTAGCCTATCATTAGCATTACAGCATTACTACCACTGATCCCTGGCCTATCATTAGCATTACAGCATTACTACCACTGATCCCTGGCCTATCATTAGCATTACAGCATTACTACCACTGATCCCTAGCCTATCATTAGCATTACAGCATTACTACCACTGATCCCTGGCCTATCATTAGCATTAcatcattactaccactgatCCATAGCCTATCATTAGCATTACAGCATTACTACCACTGATCCCTAGCCTATCATTAGCATTACTGCATTACTACCACTGATCCCTAGCCTATCATTAGCATTACTACCACTGATCCCTAGCCTATCATTAGCATTACTGCATTACTACCACTGATCCCTAGCCTATCATTAGCATTACTACCACTGATCCCTAGCCTATCATCATTATCATTACAGCATTACTACCACTGATCCCTAGCCTATCATTAGCATTACAACAAGAAAGAAGCCATCATCTATACAGTAGCAGTACCAGGCTCCCCACTGCCCGAGTCCcacatggccccctattcccttcaCAGTGCACTCCTTTAACCAGGTTCATTTTCAAATGAACAAAAACAATCCTCACATTATCCTTGAATAAGTTTTAAGAGTACCAATTCAGTGCAACGACACCCACACTGGTCAAGTCATAGGAACCTTTTTTATCCAAATGATGTTGGTAGAAGACTGCCTCAGTAGGCATGGTAGTCTATAGACTGCTATGGGTACTTGGTAATTGGCTGGTCTTCAGTAGCAAACTAGAAATACGGTCAGATGTACAATCAGGGCTCTCCCTGGGATTTTCTGCCAAGGTGGTGCGGATGTAGGACTAAGGTTGTGTAGGAGAAGGCCCAGATTGGGTCAGTCGACTTTCCCCTCAGGCTAGAGCTATAAATTAAATCAAACATTGTAGTAAACATAGAAGTATTGTGTTTGATGCTAAATTAAATTGAGGTGTTTTTTTTCTAGGTTAAATTGAGGGGTAATGAAGGTGGATCGTCTAGTGAAAATGCAAACTAGCTTCTTCTTAAACTTGTTTGAGGAGAAAATTCTAAATAATTAAATTAATGGATGCAATGTAGCAGTCTAGTTGACTGTAGGATATATGGAATATGACAAAAATTGAGCTAGGCTTATAGGAGCTGGTTCCAGATCTCTATCCCTGACCTCATCCACCGGCCCGGACCTCATCCACCGGCCCTGACCTCATCCACCGGCCCTGACCTCATCCACCAGGTATTTGAAGAGgacagatccacaaatgattcAATAACATAGGCCTGCTAATCTTTAACACTTTAACATAACTTTCAATGAAGGACAGTATTAGCAGAACAGCTCTCTGCCATGTCTGTTTCCATCCTCACAGTGACGCACACTGAACTAGCGCAGCGCTGAACTAGCGCAGCGCTGAACTAGCATAACACTCAGTAACATTGAACTACTGCAACACAGCACATGTTGCTCGTCAATGTGCTTGTGCCTACTACCATTGCAGAGAAATTGTTCTCGCTTAGTTGACTAAACACTGTAGCTAACTACCTTAGTCGTAATGACGCCTTAGCTAAGGAGCTAACTGCTAAATAGTGGTTATGTGCTTGACTAACACTTACAATTATGGAAAATGTATTTGCCAAACAGTTGGTTCTCCATTTTCCCGCTCACGCATCAGTGGTATGAACAGACAGAGTGAAGAGCTGCTATCAAGATGGAGTGAGGAAAACATTACTATGAACACAGGGGGGGAGGAGAGCTGGAGATGTTTTCTCCTCAGCCAAGTCCTCTGATTGGCTCAGCTCCAACTTTAGCCGGTTGAGTCAAAAACCACAATGTGCCAAATAGAAGCCTATGGTAGGTACAATGTATGTTGGCAGGTCTGCGTTATCACCAATAAAACTATTCCATCATATATGAATACATTTCTGTGCAGATTCTTCCAGCGTCTGTCTGGTTATTAAAACagctatataataatataaaagaCGGCAAAAATAAAAAGCTGGGGTTCCTTAAGGAACCAACGGGCTCAGACACAGCTGTATAGTCCTGACTGGGGTTCCTTAAGGAACCAACGGGCTCAGACAGCTGTATAATCCTGACTGGGGATCCTTAAGGAACCAACGGGATCACAGCTGTATAATCCTGAAGGGTTCCTTAAGGAACCAACGGGATCACAGCTGTATAGTCCTGACTGGGGATCCTTAAGGAACCAACGGGCTCAGACACAGCTGTATAGTCCTGACTGGGGATCCCTAAGGAACCAACGGGCTCAGACACAGCTGTATAGTCCCGACTGGGGATCCTTAAGGAACCAACGGGATCAGACACAGCTGTACAGTCCTGACTGGGGATCCTTAAGGAACCAACGGGATCAGACACAGCTGTATAGTCCTGACTGGGGATCCTTAAGGAACCAAAGGGATCAGACACAGCTGTATAGTCCCGACTGGGGATCCTTAAGGAACCAACGGGATCAGACACAGCTGTACAGTCCTGACTGGGGATCCTTAAGGAACCAACGGGATCAGACACAGCTGTATAGTCCGGACTGGGGTTCCTTAAGGAACCAACGGGCTCAGACACAGCTGTATAGTCCTGACTGGGGATTCTTAAGGAACCAACATGCTCAGACACAGCTGTATAGTCCTGACTGGGGATCTTTAAGGAACCAACGAGATCAGACAGCTGTATAGTCCTGACTGGGGATCCTTAAGGAACCAACGGGCTCAGACACAGCTGTATAGTCCTGACTGGGGATCCTGAAGGAACCAACACATGCTCAGACACAGCTGTATAGTCCTGACTGGGGATCCTTAAGGAACCAACGGGATCACAGCTGTATAGTCCTGACTGGGGATCCTTAAGGAACCAACAGGCTCAGACACAGCTGTATAGTCCTGACTGGGGATCCTTAAGGAACCAACGGGATCAGACACAGCTGTATAGTCCTGACTGGGATCCTTAAGGAACCAACGGGCTCAGACACAGCTGTATAATCCTGACTGGGGATCCTTAAGGAACCAACGGGTTCAGACACAGCTGTATAGTCCTGACTGGGGATCCTTAAGGAACCAACGGGCTCAGACACAGCTGTATAGTCCTGACTGGGGATCCTTAAGGAACCAACGGGCTCAGACACAGCTGTATAGTCCTGACTGGGGATCCTGAAGGAACCAACATGCTCAGACACAGCTGTATAGTCCTGACTGGGGATCCTTAAGGAACCAACGGGATCACAGCTGTATAGTCCTGACTGGGGATCCTTAAGGAACCAACATGCTCAGACACAGCTGTATAGTCCTGACTGGGGATCCTTAAGGAACCAGTGGGCTCACAGCTGTATAGTCCTGACTGGGGATCCTTAAGGAACCAGCGGGCTCAGACACAGCTGTATAGTCCTGACTGGGGATCCTGAAGGAACCAACATGCTCAGACACAGCTGTATAGTCCTGACTGGGGATCCTTAAGGAACCAACGGGATCACAGCTGTATAGTCCTGACTGGGGATCCTTAAGGAACCAACATGCTCAGACACAGCTGTATAGTCCTGACTGGGGATCCTTAAGGAACCAGTGGGCTCACAGCTGTATAGTCCTGACTGGGGATCCTTAAGGAACCAGCGGGCTCACAGCTGTATAATCCTGACTGGGGATCCTTAAGGAACCAGCGGGCTCACAGCTGCACCCTAATGATCCACCCTTTTCTCAAAGTGTTCACTTGAACATTTCCCATCATACATTtaacaatgatgaaaataaactCTCTTCAGCCAATGATTACAATCTAATGCCTTTAAATCCATGACATGGAGTATGCCACACTTTGGGAGGAAGGGTGGAGAATCTGGACACAGCCTCACCCTCTACATGGAAGCATAGAGTCTAGAGCCTGGCCATGCAGCTGTGTCTCAGTCTAGAGCCTGGCCATGCAGCTGTGTCTCAGTCTAGAGCCTGGCCATGCAGCTGTGTCTCAGTCTAGAGCCTGGCCATGCAGCTGTGTCTCAGTCTAGAGCCTGGCCATGCAGCTGTGTCTCAGTTTAGAGCCTGGCCATGCAGCTGTGTCTCAGTCTAGAGCCTGGCCATGCAGCTGTGTCTCAGTCTAGAGCCTGGCCATGCAGCTGTGTCTCAGTCTAGAGCCTGGCCACGCAGCTGTGTCTCAGTCTAGAGCCTGGCCACGCAGCTGTGTCTCAGTCTAGAGCCTGGCCACGCAGCTGTGTCTCAGTCTAGAGCCTGGTCACGCAGCTGTGTCTCAGTCTAGAGCCTGGCCATGCAGCTGTGTCTCAGTCAGACAGGACCAAGCAGTCTTTTAGGGGAGGGGATCAGGTGCTACTGGTGAGGCTGTTAGATGCtctgacaacactgcatcttTGGTTTGTTCTCCGTCGGCTGCACCTGGATGTTGACCACGTTGTTGCTAGGCGACATGTCGTTGTCTCGTCGGTCCGACATCTGTTTCTGAGACACGATGCGATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU242660 lncRNA downstream 76213 102673246 ~ 102673469 (-) True G213637
TU242659 lncRNA downstream 76832 102672557 ~ 102672850 (-) True G213636
TU242658 lncRNA downstream 77559 102671780 ~ 102672123 (-) True G213635
TU242657 lncRNA downstream 78099 102671063 ~ 102671583 (-) True G213634
TU242588 lncRNA downstream 215116 102534226 ~ 102534566 (-) True G213573
TU243216 lncRNA upstream 4384 102760876 ~ 102761080 (-) True G214017
TU243217 lncRNA upstream 9397 102765889 ~ 102766153 (-) True G214018
TU243218 lncRNA upstream 10038 102766530 ~ 102766886 (-) True G214019
TU243219 lncRNA upstream 12617 102769109 ~ 102769601 (-) True G214020
TU243095 lncRNA upstream 25918 102782410 ~ 102784816 (-) True G213982
trnaq-cug mRNA downstream 14331 102735280 ~ 102735351 (-) True trnaq-cug
XM_036934567.1 mRNA downstream 135276 102575299 ~ 102614406 (-) True c2h15orf39
XM_036961277.1 mRNA downstream 188696 102508492 ~ 102560986 (-) True hexa
XM_036961273.1 mRNA downstream 188703 102508492 ~ 102560979 (-) False hexa
XM_036961269.1 mRNA downstream 305423 102426057 ~ 102444259 (-) True LOC110501505
XM_036961311.1 mRNA upstream 14653 102771145 ~ 102777854 (-) False LOC110501471
XM_021579067.2 mRNA upstream 14653 102771145 ~ 102777929 (-) True LOC110501471
XR_005039467.1 mRNA upstream 15706 102772198 ~ 102772265 (-) True LOC118944154
XR_005039471.1 mRNA upstream 16059 102772551 ~ 102772618 (-) True LOC118944156
XR_005039463.1 mRNA upstream 18420 102774912 ~ 102774979 (-) True LOC118944153
TU242475 other downstream 218456 102529552 ~ 102531226 (-) False G213475
TU242469 other downstream 362169 102386129 ~ 102387513 (-) False G213475
TU242474 other downstream 362169 102386129 ~ 102387513 (-) False G213475
TU241747 other downstream 1003131 101743062 ~ 101746551 (-) False LOC110517830
TU243229 other upstream 62876 102819368 ~ 102819829 (-) True G214030
TU243238 other upstream 87529 102844021 ~ 102847527 (-) True G214038
TU243242 other upstream 106915 102863407 ~ 102863771 (-) True G214041
TU243335 other upstream 365157 103121649 ~ 103122969 (-) True G214126
TU243346 other upstream 400018 103156510 ~ 103157854 (-) True G214137

Expression Profile