RNA id: XM_036969956.1


Basic Information

Item Value
RNA id XM_036969956.1
length 3349
RNA type mRNA
GC content 0.42
exon number 8
gene id si:dkey-262k9.2
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15023525 ~ 15040893 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATGATGGCATGTCTGCAAAAGGATTGCCAAATCCTCTCTGTGTACTTTGCCACTTTGGGTTTCATGCTGAGACGACCCATTTCTTAACTTggttcacacacacagccagaccaACGCCACACTCTTCTGTTGCCTGATGCTGAATTGCTTCATGGCAACCTGTGTGCATGCTCTCAATAGCAGcATTGGAAGATGTTGCGATTGCTGTTTCTGTGTCTGATTGTGACTCTGCGAGGAGCTGCTGCTTCCTCAGAGGAGAGTGAAGGCTCAGCAGACGTAGCAGATGTAGACGATGAAGACCTATTCAAGCAAAACGTGAGCCCAAATCTCGGACCATATTCCACGCTTGAACCTGAAACTGATGATACTGTGGACATAAACAAGGCAACAGGAGAAAAAGAAGCGGGAGATGGATTTACTACCATTGTCATCATCGTAGCCGTGAGTGTGGTGGCACTGTCAATCGCAGTGATAGTAGCCATAGTGTTGGTCCGGCGTCGCATGCACAACCGACCACAAGGGATCTACTCAGTTCCCACAGAACAGGGAATGAAAGGAACGGTCTAACCACAAGATGAGCTCAAGTCCCATTGGACACCTGCAGGGGAGGACCAATGAACTGAGCTCTACAAACTACTGCCCTTTGAACCAGGAAGGGTACACTTTCCACCCCAGCCTGCTCCTACTGAACCACCCCCTACTGCTCTCCTCTCTGGGACCATCTGTTACTGTGTCATGGGTCCCCTCCAAAGGAAACTTAGTTTCCTTTATTTGGTCTCTTGTTTGTTTCTGTCCCACATATCCCaaagtatgtgtgtatataaGGGCATTCTGCAGTTGCTGCTTTTGTCCAATGGCATATTTTACAAGAAAAACAAATGTCCCGCTAGAAGTAATTTGCAATTGCAATTGTAAACTAAACTGTATTCAGAGTTGATTTAGTGCATTCAGAACAGACTTTTTTGAATGAGAAAAGCGAGTTTAATCCACCCTAAACTAGCCCAGTCCTCACTAAATTTCCACGTTCAGCTCTGTGACATATCCTGTCTTTGGCCTATTAGTGACAACAGCCAGTACAGTTGAAAGATAAAGCTTGTTCTCCCGTCTTCTCAACCTATGAAgggaaaaaaggaaaagaaatgGGTGGAAAAAGCCAGAGGTCTGAGATGAGATGGAATTAATCAACCTTTGTGAATGATGATGTTTTCTTTTCAACACCCCCCTTTTTCTTTTTGAAATGCTTCCTTTCAAAACGTCAACCACATCACTGATTGTAAATAGCTCTTGGATGGCTGAGGTATGTCTGATTTTAATGGTTTATAGTGCTGGGACGGGGGTATGGTGGGGAGAAATTGAGAGGATAAAATGAAGTGCAGGGCTGGGGTGGTTGGGGGGTGAGTGTGGAAATACCCACAATGCCCATGTTTCATTCATACTGAGTTTAAGGCCACTCCACCATCGCTCCCTGGCTCTCTTTTCATTTAAATGGAAATCAATCGTGCCCCGTGATCAAAAGCTTTAGGGCCGAGGTGCTGGCTGGCTTATTTCTTACTCTGCATTACAGAGAAAGGATGTTTTTTGGCAGGggtcagaggagagggggaggtggacaTAATGTGCTTTGGCATGACAGGGCTATTCATTTGTTGCGTTATCATGAGGGAACAAGGGTTGTTGTGAGTGTGTGCGAATTACACCCAAGATCAAGTAGTGTTGAAATCACAGGGTCTGTCAAAACAGCGTGCCCACTGTCTTTCTCCACTCAACCTTACCGCTGTGATGTCATCAGCTGAGGATGGGCTTGGCTGGGTTCCAGGCTGTACAGAAACACCTGTGTGTTATTAGTGCCTCCATCTCATTTTTGTGTTCTCTGGTTCACTCAATCAGAATTGTCCCAATCTGTTTAAGTTGACGAAATTCAATTAGTAAACAGATTCTAAACGCATAAAGTGTGGTATGCTTGTGTCTGCACTCTGCAGGTGTTTGTGTATGTGGGGTTTGATTGAAGCATCACAACTAGCCCAGTAAGCCTGAGATGTAGTCTAGCTCCGACAGCATTTCAAAAGGAGTATAATTTAGCATACGGTAAAAGAACAAAACAACTTTCACTTTCTGTTTGTTTACTGACCACAGTCACATTCAAGAAAGCCTTTTTTCCGTACTCAGAAATACCCTTAGAAATTCCCTTCACCTACAAAGTAGACGTTGTGGTTACGAGTCAGCGACTAGTGTCATTATAGATGAGGTTTGCATAGAACAGTTTTTCTGGTTTGTGATACAAAGTACATCTAAGAACCATTCAAGCAAGCATGTTGAAATAGCCATGAACTAAACAAAGTGCAAAAATTCTAAAGTAATTGGTTTGACCTGTGTAATGCCCTGTTCATTCAGCTACACTCGCACATCTCCGTGGCATTATGCTCCTTCAAAGCCACTTCGTCTGTTGCATTGCTATTGTGAATGCATCAAAACTGATTGtcctctatttctttctttcaggGCTTACGTTGAAAAGGGTATGAAATGTTCAAATattggaaaaaaatatatatattttcaaaagaGCTCCATGGGCTTTTTCAGCTGTGCAAAAGTTTCTTAAGGCCCATTTTTCAtctaatctttaaaaaaaaaaattgtcaagaGAAAGCATTACTGAGTTCAGCCAATCCCTGACACTGTCAGACATGGCTCTCCAAGAGCCCTTACCTATTACACAAAAGTCCTTACAACACCCCCTCTCCAAAAAAACTCTATCTGGTTAGGGTTTATATTTGTCAATTTTACACGAATGTTTCAGGATTGTGCCTTCTGTCTTTTGATGAAAATAGGAAAATGTATCAACCAGCAGATTCTGTTTGACGAGCTTGGATGATGCGTCCTCTGCACAGCAATACGTAATGCAAATgcgtacaacaacaaaaatattttagctttgtgtattattatgtgttttTATGAGATGTCCTATTGTAAAGTCAATATTCAAATGATAATTTAGTCTTAATTTTTAAGCACACGTCTTCATCAGTACTCATAATCAATGCTGATAAACCCTGTACATTCTGTTTGCTCAGGATCATTAACTGTTTGTAGTGTACAGCAGCAAAGTGTTTCTACAATACTCTACATCTCATCCATTCCTATGTCTATGAATCTGAGTGTGTTTTAGAATAACTAGACCTGCACTAAAAGTGTCATCTTGCTGTTCTACTTGTACTGTAAGTTTCCACAGCCCACAAATTCTCCAATCATTCAATTTGGACTAGCATTACACATGTTCTGTATATGGCTCTTCTATATTATGGATTATGACACttttttacattaaatgtgtTCTGCTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260161 lncRNA downstream 950 15015093 ~ 15022575 (-) False G227438
TU260162 lncRNA downstream 5538 15004287 ~ 15017987 (-) False G227438
TU260163 lncRNA downstream 5538 15015093 ~ 15017987 (-) True G227438
TU260203 lncRNA downstream 25124 14997217 ~ 14998401 (-) True G227476
TU260199 lncRNA downstream 32119 14990463 ~ 14991406 (-) True G227472
TU260418 lncRNA upstream 122039 15158002 ~ 15171903 (-) False plm
TU260419 lncRNA upstream 122039 15158002 ~ 15171903 (-) True plm
TU260460 lncRNA upstream 129664 15165627 ~ 15165998 (-) True G227707
TU260470 lncRNA upstream 158234 15194197 ~ 15216186 (-) True G227717
TU260486 lncRNA upstream 189863 15225826 ~ 15226093 (-) True G227732
XM_021592051.2 mRNA downstream 189494 14780067 ~ 14834031 (-) False LOC110510856
XM_021592073.2 mRNA downstream 189494 14780067 ~ 14834031 (-) True LOC110510856
XM_021592067.2 mRNA downstream 189495 14780067 ~ 14834030 (-) False LOC110510856
XM_036970146.1 mRNA upstream 66390 15102353 ~ 15109931 (-) True LOC118936618
XR_002471684.2 mRNA upstream 76872 15112835 ~ 15115841 (-) True LOC110511165
XM_021596779.2 mRNA upstream 122629 15158592 ~ 15171916 (-) False plm
XM_021596777.2 mRNA upstream 122629 15158592 ~ 15171917 (-) False plm
NM_001165198.2 mRNA upstream 122630 15158593 ~ 15171796 (-) False plm
TU259832 other downstream 386815 14598789 ~ 14636710 (-) False LOC110503689
TU259714 other downstream 498671 14523180 ~ 14524854 (-) False psenen
TU259715 other downstream 498671 14523256 ~ 14524854 (-) True psenen
TU259726 other downstream 548359 14428793 ~ 14475166 (-) True G227060
TU259117 other downstream 1021717 13999736 ~ 14001808 (-) True LOC110538195
TU260846 other upstream 500402 15536365 ~ 15538315 (-) True LOC110512327
TU260901 other upstream 565052 15601015 ~ 15601488 (-) True G228094
TU260907 other upstream 670271 15706234 ~ 15708265 (-) True G228098
TU261050 other upstream 751659 15787622 ~ 15791165 (-) False G228191
TU262386 other upstream 1803426 16839389 ~ 16839839 (-) True G229373

Expression Profile