RNA id: TU260203


Basic Information

Item Value
RNA id TU260203
length 480
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G227476
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14997217 ~ 14998401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtctacatGTCTCTCTttttgaatctctctctccctgtctgtgtgtctacatGTCTCTCTttttgaatctctctctccctgtctgtgtgtctgcatgtctctTTTTTAATGTCTCTCCCCATGTCTGTATGTCTCTTTTTgaatgtctctctccatgtctgtgtgtctacATGTCCCTTTTgaatgtctctctccatgtctgtgtgtctacATGTCTCTCTttttgaatctctctctccctgactgtgtgtctgcatgtctctTTTTgaatgtctctctccatgtctgtgtgtctacATGTCCCTTTTTaatgtctctctccatgtctgtgtgtctgcatgtctctTTTTtaatgtctctctccatgtctgtgtgtctgcatgtctctTTTTtaatgtctctctccatgtctgtgtgtctacATGTCCCTTTTgaatgtctctctccatgtctgtgtgtctgcatgtctctTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260199 lncRNA downstream 5811 14990463 ~ 14991406 (-) True G227472
TU260042 lncRNA downstream 97078 14899834 ~ 14900139 (-) True G227340
TU260033 lncRNA downstream 102672 14894249 ~ 14894545 (-) True G227331
TU259902 lncRNA downstream 282384 14714273 ~ 14714833 (-) True G227207
TU259855 lncRNA downstream 372101 14620268 ~ 14625116 (-) True G227163
TU260162 lncRNA upstream 5886 15004287 ~ 15017987 (-) False G227438
TU260161 lncRNA upstream 16692 15015093 ~ 15022575 (-) False G227438
TU260163 lncRNA upstream 16692 15015093 ~ 15017987 (-) True G227438
TU260418 lncRNA upstream 159601 15158002 ~ 15171903 (-) False plm
TU260419 lncRNA upstream 159601 15158002 ~ 15171903 (-) True plm
XM_021592051.2 mRNA downstream 163186 14780067 ~ 14834031 (-) False LOC110510856
XM_021592073.2 mRNA downstream 163186 14780067 ~ 14834031 (-) True LOC110510856
XM_021592067.2 mRNA downstream 163187 14780067 ~ 14834030 (-) False LOC110510856
XM_036969961.1 mRNA upstream 25124 15023525 ~ 15035282 (-) False si:dkey-262k9.2
XM_036969956.1 mRNA upstream 25124 15023525 ~ 15035963 (-) False si:dkey-262k9.2
XM_036969951.1 mRNA upstream 25124 15023525 ~ 15038162 (-) False si:dkey-262k9.2
XM_036969943.1 mRNA upstream 25124 15023525 ~ 15040893 (-) True si:dkey-262k9.2
XM_036970146.1 mRNA upstream 103952 15102353 ~ 15109931 (-) True LOC118936618
TU259832 other downstream 360507 14598789 ~ 14636710 (-) False LOC110503689
TU259714 other downstream 472363 14523180 ~ 14524854 (-) False psenen
TU259715 other downstream 472363 14523256 ~ 14524854 (-) True psenen
TU259726 other downstream 522051 14428793 ~ 14475166 (-) True G227060
TU259117 other downstream 995409 13999736 ~ 14001808 (-) True LOC110538195
TU260846 other upstream 537964 15536365 ~ 15538315 (-) True LOC110512327
TU260901 other upstream 602614 15601015 ~ 15601488 (-) True G228094
TU260907 other upstream 707833 15706234 ~ 15708265 (-) True G228098
TU261050 other upstream 789221 15787622 ~ 15791165 (-) False G228191
TU262386 other upstream 1840988 16839389 ~ 16839839 (-) True G229373

Expression Profile