RNA id: XM_021597587.2


Basic Information

Item Value
RNA id XM_021597587.2
length 547
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC110520337
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62164843 ~ 62175163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCAAAACCGATCCTACTCGGAAATGTTCGGCCTTCGCGAAGTAATGATGAAAAGCGGATGATAGACTTTCGAAAGTGTTGGTGCAAGCTTCCTCTGAGATGATTCCCAAGAGGTTGGAGAGCTCCTTCGGGATGGCGCCAAACAAGAAGGGCGGTGAGAAAAAGAAGGGGCGTTCTGCCATCAACGAGGTTGTGACCAGGGAGTACACCGTCAACATCCACAAGCGCATACATGGCGTGTCCTTCAAGAGGAGGGCACCTCGTGCTCTCAAGGAGATCCGCAAGTTCGCCATGAAGGAGATGGGAACCCCTGATGTACGCATCGACACTCGCCTGAACAAGGCTGTATGGACCAAGGGTGTGAGGAATGTCCCATACCGTATGCGCGTGCGCCTGTCAAGGAAACGCAATGAAGACGAGGACTCTCCCAACAAACTGTACACCCTCGTCACATACGTTCCTGTCACAACATACAAAGGTCTGCAGACGGTCAATGTGGATGAGAACTAATTATTCACTGGTGttgaaataaatgtataaaataaa

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02910 RP-L31e, RPL31; large subunit ribosomal protein L31e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321562 lncRNA downstream 13353 62148317 ~ 62151490 (-) False G283541
TU321561 lncRNA downstream 13353 62150524 ~ 62151490 (-) True G283541
TU321411 lncRNA downstream 259649 61897733 ~ 61905194 (-) True G283398
TU321383 lncRNA downstream 315144 61845415 ~ 61849699 (-) True G283373
TU321287 lncRNA downstream 466524 61693218 ~ 61698319 (-) True G283282
TU321611 lncRNA upstream 73084 62248247 ~ 62254684 (-) True G283587
TU321614 lncRNA upstream 94061 62269224 ~ 62271259 (-) True G283589
TU321724 lncRNA upstream 237553 62412716 ~ 62413039 (-) True G283697
TU321936 lncRNA upstream 303371 62478534 ~ 62480130 (-) True G283899
TU322013 lncRNA upstream 439508 62614671 ~ 62621593 (-) True G283973
XM_021597577.2 mRNA downstream 35254 62126638 ~ 62129589 (-) True LOC110520331
XM_021597575.2 mRNA downstream 62720 62090263 ~ 62102123 (-) True LOC110520328
XR_005051350.1 mRNA downstream 83672 61990880 ~ 62081171 (-) False LOC110520327
XM_021597585.2 mRNA upstream 5334 62180497 ~ 62188087 (-) True LOC110520336
XM_021597597.2 mRNA upstream 56752 62231915 ~ 62249501 (-) True LOC110520342
XM_021597602.2 mRNA upstream 250521 62425684 ~ 62533307 (-) False LOC110520347
XM_021597603.2 mRNA upstream 250521 62425684 ~ 62533307 (-) False LOC110520347
XM_021597604.2 mRNA upstream 250521 62425684 ~ 62533307 (-) False LOC110520347
TU315276 other downstream 4575660 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 4761268 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 4867081 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 6753356 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 539412 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 2794386 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 2839096 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 2879537 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 2879537 65054700 ~ 65075985 (-) True G286638

Expression Profile