RNA id: XM_021597575.2


Basic Information

Item Value
RNA id XM_021597575.2
length 4449
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110520328
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62090263 ~ 62102123 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATAGCTGAATTTGAAGTCGCTAACTGAGCAACAGTATGGAGTACGGCGTGGACCAGATACTTTCATTTTAATAGTATTTTGGCATCAATTGTTATAACCGAACAAGAAAAGTTTGAATGTCAAGACCCGGGCAGAGAAACTAACTAAGCTTTCCAGCAACAGTGAGCGCGAGAGGTTAGCCAGCTAGGGAAATTAATTGGGTTGTTTCGGGTCTTACATAAAAACAGGTAACGTGAAATTGCACTCGGAACTTTGCTCCACAGAACGTTACTCCCAGGAAACCGTCCTTTTGCCTTTAATGACTTAAAGCCTGCCAACCTCCGATGAAGGATTTGAGTTGCCAACAATGTTTAGCTGACTAGAAGTACATACCTAGCGTTACTTGCTGTTATTTGGGGAGGCGTTATGCCGTTGTCAGCCAAACAAGAGGATTGACTCGACGTTTAACGTTACTTCCTCAGTTCGTGAATTACTGAACTGGTTTATTCAGCAAAGCTGGGTAGGTAAATAGGCATTACAGTGCTGTAACACAGAGTCCGAATATATCGGGTTTGAAAAACGGGAAGTCTACATACAAACTAAtttgacattttagcaaatgaCTGGTGCGAATTCTATTCGGCTGTCGTGTAACGAGGCCTCTTAACCAGCTCTTCTCTTGGAAAACGACACGAATCGTTCACTATGGCACATGCAACGTTATAGTCTGACATTTGGGAAGTCTACATACAAACTATTTTGAAATTTCAGGAGTCACCAGTTTGGTGCGTATTCAATTCGGCTATCGCGGAACGAGGCCTAACCAGCTCTTCTCTTGGAAGACGACAGGAGTCTTTCACGATGGCACATGTACCCTTATAACGTTAGTCTGACGACGTTTTGTGAGAAGGAGTGTTTTTGAACACAGTTTGCTATGTGTAATATTCCAAGATGAACATGGAGACGGTAATCCAATCTCACCAGTCGGCGCAGTTTGTCCACCCGGTATACGACCCTGGAGCAGCGGGTATATGCCCTGAAATGCTCGAGGTGGCAGAGGAAGCAAACCGGGCAGGTGACTACGACCTTGCTGCGGAGATCTATAGTTCTCAGCTGGCGGACCTCCAGCATCCAGACCGGGGCCTCTGTTTGCGCAAAGCTGACGCTTTGGCCCAGACCGGGCGGATAGCAGAGGCGCTTGACTCGTACTGCACCGCGGCCAACATTGGCGAACTTCGGCCAGGCGAATTGCAGCTTCTGGTTGAAAACATAGCACGGACTCTTCGCGAGAAGGAGCTAACGTTAAACATTAATTCGAAGGCAACGAGTTGTCATAATAGTGGGAATGGAAACGATGGGGTTGAGGCCGATGGGACGTTTGAGGAAGAACCCTTGGACTTGTTTTCATGCCGCCTTTGTAGGTGTTTACTGTCAGAACCAACCACATTGGAGTGCGGCCACACGTTttgcaaacattgtttagaaGAAGAAACTGTCAAAGACTGCATACAATgcaaacataaactgaacaaaaaaGACGGACAGATCCTGTCCATTGGGTTTAGAGTAAACGTCATTCTCAGTAGTTTGTTGGATAAATGTTTCGACTCTGAAAGTAAAGCCAGGAGACATTGGATAGAAGGCGAGGGCTCACGAAAGAAGCACGATTACACTGATGCCCTGGACAAATACAACAAAGCCGTAGAactggCGCCATCTATAGGTAGGCTACTGGGACAGCGTGCTGAGCTGCACATGGACAGTAGGAACTACAGCCAGGCCATCCAGGACGCAGAGAGCTTGTGCAGACTCAAACCTCTCTGTCCAAAGGCCCACTACATCAAGGCCTCAGCCCTGAGTAAAGCCAACTACAATGATGAGGCCTTAAAAGAGTACTTCATGTGTGTAGCGCTCAAGCCTGATTGGATGACGGTGAAGCTGGAAGCTCAGAAGctGCTTAGTGAGCTGTTCTCGTCAGCGTTTGAAAAGGACGGTCAGCCCACTCCCCTACATCCCCTACAGGGTGGTCCCTCCACTCGCCGCCTCAAGCCTCCCGCCCTGCTCAGCTCTCTACACCCCCCCACCACCCGACAGAGGCCTGGCTGCTCCTCTCAGgaCCCAGCGTTTATTGCAAGTAAGAGTTCTCCTCGCGAGggtccctccttctcctccaaacACCCCCTGTCCCCCAGTAGCGAAGCTGAGAAGCCTCTGCTAGAAGACGCCAAGAGCCTGGCCAGTGTCCTGGCTGCCCTACCTGCCCCCCCAGGAGGCCTCAAGAGGAGACATAGTGGGGACAGCCCAGCCTTCAACGCCCCCTCCAAACTGCCCAGACCAGATGAAGCCTATTCCTCCTCTCAACCTCCTGCTGCTTCCCCTGGGAGGAGGACAGTGGCTGCAGACCTGCTCGACAGTAGAGATATGGAGTGCTCCCTCTGTATGAGGCTGTTCTATGAGCCCGTCACCACCCCCTGTGGACACACCTTCTGCCTCAAGTGTCTGGAGCGCTGTCTGGACCACAACCCCAATTGCCCTCTCTGCAAAGAGAACCTCTcagagTATCTGGCCACTAGAGGGTACAACAAGACGCTGCTGATGGAGGAGGTGCTGCAGCGTTACCTTGGAGATGAGCTGGCGGAGAGGAAGAAgatccacgaggaggagatgaaggAACTGTCGAACTTGAACCAGGAAGTACCAATCTTTGTGTGCACCATGGCCTTCCCCACCATCCCCTGTCCACTGCACGTCTTCGAACCATGCTACCGCCTCATGATCCGCCGCTCCATGGAGACCGGAACCAAGCGGTTTGGCATGTGCATCGCTGATGAGTTGAAGGGTTTCGCTGACTATGGCTGCATGCTGGAGGTCCGGGATGTCAAGTTCTTCCCCGATGGGAGGTCCGTGGTCGACACCATTGGAGTGTCCCGCTTCAAAGTGCTGAGCCACGGTCAGAGAGACGGATACAACACGGCCAAGATTGAGTACCTGGAGGATAAGAAGGTGGAGGGCCAGGAACTAGCAGAGATGCAGAAGCTTTATGTCTCTGTGTACGACCAGGCCAGTGGCTGGTTCACCTCCCTCAAAGATAACATGAAGAGCCAGATAATCAGCCACTTTGGACACTTGCCCGGGAAGGACCCTGACCCACAGAGTAATCCCAGTGGTCCAGCGTGGGCTTGGTGGCTGTTGGCTGTGCTGCCTCTGGACAACCGTGCCCAGCTCACCATCCTGGCCATGCCCTCCCTCAAGGACCGCCTCATCGCCATCCGCAGGGTCCTTATCTTCGTCACGCGCAAGAGACCCCGATGACCGCTCAGCCGCCACCACAACTGCTAGGACCATGCATGGTCATTCACTCGTTCATTAAACCCACTCATCAGACTTGATATGAGAGCAATGTCTTTGACTCCCTTAGACATTAGGGTTGACTGAATTATGTCACGCTATCTCTCagcttcctctgtcccctctcttaGGGAGGGAATAAGAGGTCAAGATAATAGAACTGGTGACTGTCATGATGCACCAGAACTAAGCTGACCACATAACTGTGTCGAGTCCATGATGGTGTGACTTATCCAATTTTCTTAATATTGTAAATTTagtataaaaacatatttaaaaaagaCCTGACACGTACCAAAAAATAATTTGTATGACTGAAAAATAATACAACACCGATTGTATTGGGTTGTCTTTAGTTTGGATGTTATGTTTCTGTTCAATCCCTGCTGACTATGGTGAGAGACACATGTAAGACCCAGAGAGATAGAAACCACCGAATGGAGTAGAAGGTCTACATATGAGAATGTGCTCCTGTTTAAATGGCTTTTCTGCATTCATTTCTACATGACTAGGGAAATAGATGCAGAACCGTAAGCCTGCGTCTTGCCCAGGCATGTGCCCCAATAGAGTGGTGAAGGAGTAGTGCATCTGAAAGAAATGCAAAAGAGTCCTGAAATTGGTATGTAAGTAAATGTAAGAGATTTGGGGTTAAACTCACTTATTGGTAGACATAATCTAAATGcaactttttttttacatttattttttactttcagTAAAATTAAGACATTTAAAACAATTTCCCTACTGTAACTTGACATTGTTTATGAACATGTAATCAAACTATGATAATCTGAATGATAGTCCAAAACAACAATGGTAATGTATGTACTGTAAGTGTCTTTGGGAAGGAAATGGGGTTAAACTAttctgtttcatgtcttgtttctcttctgctatatatatatatgatgtatGGTCAATGTGAATTGGAGGATTTAACTGTGATTATCAATGTTAACTCTCTGAGGCCTTTACAATGTCTTATTTAAGTGTATTTAGTTGTTTCTCCTGATCTGTATGACATGTGTAGCTCCTCTTTTGGCTGGTGTTATGACTTGTTTATTTATAAAAGAAGATATAGCATTTTTTTTCTGGAAAAAGAGATGCCTGAGATGTA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0004176 ATP-dependent peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321411 lncRNA downstream 185069 61897733 ~ 61905194 (-) True G283398
TU321383 lncRNA downstream 240564 61845415 ~ 61849699 (-) True G283373
TU321287 lncRNA downstream 391944 61693218 ~ 61698319 (-) True G283282
TU321259 lncRNA downstream 400688 61653325 ~ 61689575 (-) True G283256
TU321251 lncRNA downstream 442984 61643098 ~ 61647279 (-) True G283251
TU321562 lncRNA upstream 46194 62148317 ~ 62151490 (-) False G283541
TU321561 lncRNA upstream 48401 62150524 ~ 62151490 (-) True G283541
TU321611 lncRNA upstream 146124 62248247 ~ 62254684 (-) True G283587
TU321614 lncRNA upstream 167101 62269224 ~ 62271259 (-) True G283589
TU321724 lncRNA upstream 310593 62412716 ~ 62413039 (-) True G283697
XM_036974853.1 mRNA downstream 9092 61982745 ~ 62081171 (-) False LOC110520327
XM_036974855.1 mRNA downstream 9092 61990880 ~ 62081171 (-) False LOC110520327
XR_005051350.1 mRNA downstream 9092 61990880 ~ 62081171 (-) False LOC110520327
XM_036974854.1 mRNA downstream 9092 61992004 ~ 62081171 (-) False LOC110520327
XM_036974856.1 mRNA downstream 9093 61999082 ~ 62081170 (-) True LOC110520327
XM_021597577.2 mRNA upstream 24515 62126638 ~ 62129589 (-) True LOC110520331
XM_021597590.2 mRNA upstream 62720 62164843 ~ 62169717 (-) False LOC110520337
XM_021597589.2 mRNA upstream 62720 62164843 ~ 62171802 (-) False LOC110520337
XM_021597591.2 mRNA upstream 62720 62164843 ~ 62174314 (-) False LOC110520337
XM_021597587.2 mRNA upstream 62720 62164843 ~ 62175163 (-) True LOC110520337
TU315276 other downstream 4501080 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 4686688 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 4792501 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 6678776 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 612452 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 2867426 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 2912136 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 2952577 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 2952577 65054700 ~ 65075985 (-) True G286638

Expression Profile