RNA id: trnal-caa


Basic Information

Item Value
RNA id trnal-caa
length 84
RNA type mRNA
GC content 0.59
exon number 2
gene id trnal-caa
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62542589 ~ 62542698 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcaggatggccgagcggtctaaggcgccagactcaagttctggtctctgcatggaggcgtgggttcgaatcccacttctgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321936 lncRNA downstream 62459 62478534 ~ 62480130 (-) True G283899
TU321724 lncRNA downstream 129550 62412716 ~ 62413039 (-) True G283697
TU321614 lncRNA downstream 271330 62269224 ~ 62271259 (-) True G283589
TU321611 lncRNA downstream 287905 62248247 ~ 62254684 (-) True G283587
TU321562 lncRNA downstream 391099 62148317 ~ 62151490 (-) False G283541
TU322013 lncRNA upstream 71973 62614671 ~ 62621593 (-) True G283973
TU322014 lncRNA upstream 81510 62624208 ~ 62624555 (-) True G283974
TU322031 lncRNA upstream 109343 62652041 ~ 62652651 (-) True G283989
TU322033 lncRNA upstream 109980 62652678 ~ 62653109 (-) True G283990
TU322034 lncRNA upstream 110742 62653440 ~ 62654877 (-) False G283991
XM_021597602.2 mRNA downstream 9282 62425684 ~ 62533307 (-) False LOC110520347
XM_021597603.2 mRNA downstream 9282 62425684 ~ 62533307 (-) False LOC110520347
XM_021597604.2 mRNA downstream 9282 62425684 ~ 62533307 (-) False LOC110520347
XM_021597605.2 mRNA downstream 9282 62425684 ~ 62533307 (-) False LOC110520347
XM_021597606.2 mRNA downstream 9282 62425684 ~ 62533307 (-) False LOC110520347
trnal-caa-2 mRNA upstream 523 62543221 ~ 62543329 (-) True trnal-caa-2
XR_002472970.2 mRNA upstream 5169 62547867 ~ 62595699 (-) False LOC110520350
XM_021597611.2 mRNA upstream 14162 62556860 ~ 62595697 (-) True LOC110520350
XM_036974881.1 mRNA upstream 205726 62748424 ~ 62780309 (-) False LOC110520353
XM_036974882.1 mRNA upstream 205726 62748424 ~ 62780312 (-) True LOC110520353
TU315276 other downstream 4953406 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 5139014 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 5244827 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 7131102 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 171877 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 2426851 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 2471561 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 2512002 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 2512002 65054700 ~ 65075985 (-) True G286638