RNA id: XR_002472970.2


Basic Information

Item Value
RNA id XR_002472970.2
length 2121
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110520350
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62547867 ~ 62595699 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctagcttgctagctactacAACCTCGAATACCTCTATGCGGCTCGGCTAAGGTGTTATGTTACGAAGGAGCTAAATACCTCCGGCTTTGCATTTCCCCATAAGCTTTCAAACGTCATTGCTTTGACCTATGAGCCATTGCAAATGTTAGCCTGCCTCCGTTAGTACCTACAAAAATACGCCATGAATATTGCAGAACTGTTTACATAGTAAGAATGCTGAATATCACATAACTGATGTGATTTCATCAGTATGTGCTAATTTCTAGCTTGTTTTAAccatgtgtatatacagtaacaAGTAAAACAATATTGCAACTTCCGGTAGCCTTGCGTTCTAGTTTTTCGCGCATGTCTATGGTTCGACCATGGGCGTCGTAGTAGGTGAATGTCTTGTCAGCTGACAAGCAGCATCTTTGGCTATTGCAACACACGGGTCGCTGTGTTCAAACAGTTTCTAGCTACTACAACCTAGAATACCTATGCGGCTCGATTAGGGTGTTATGTTACGGAGAGCCAGAACTGGCGAAGGAGCTATACCTCCAGCATGGCGGCAGAAATACAACCCAAACCGCAGACTCGGACGCCTGTTCTGCTCAATAAAATCGAGTCTTCCCAAGATGTTGTGAACACGGCGGTTATAATTCCAAAGGAGGACGGGGTGATCAGCGTGTCTGATGACAGGACGATCCGGATATGGTTGAAGAGAGACAGTGGCCAGTACTGGCCCAGCATCTATCACACTATGCCAGCTTCATGCTCCTGTATGTCCTTTAACCCAGAGACCAGGAGGCTGTCTGTGGGAATGGAGAATGGAACCATCTCTGAGTTCATACTGTCTGAAGACTACAACCAGATGACCCCGGAAAGGACCTATGAGGcCCACCAGGGCAAAGTGACAGTGGTGCTCTTTGTGTTGGAGATGGAGTGGGTCCttagtacaggacaggacaagaacCTCACCTGGCACTGCTCTGAGAGTGGAACACAGCTGGGGTTATACCGCACCATAGCCTGGGTCTCTGGACTACAGTTTGATGTGGAGACAAGGCACGTCTTTGTGGGTGACCACTCTGGTCAGGTGACCATCCTGAAGCTGGAGCAGGACAGCTGTAGTCTGGTCACCACCTTCAAAGGACACacagGCAACGTGACGGCACTGTGTTGGGACCCGGCCCAGAGAGTGTTGTTCTCTGGCAGCTCAGATCACTCCATCATCATGTGGGACATCGGGGGACGCAAAGGCACCGCCATAGAACTGCAGGGACACAATGATAAGGTCCAGGGCCTGTGCTATGCGCCACACACACGTCAACTGATCTCCTGCAGCTCAGATGGAGGCATCGTCATCTGGAACATGGACGTGACCAGacaggagACCCCAGAGTGGCTGGACAGTGACTCGTGTCAGAAGTGTGAGCAACCATTCTTCTGGAACTTCAAACAGATGTGGGACAGTAAGAAGATCGGCCTGCGCCAGCACCACTGCAGGAAGTGTGGGCAGGCTGTGTGTGGAAAGTGCTCTGCCAAGCGCTCCACCATCCCTCTCATGGGCTTCGAGTTCGAGGTGCGGGTGTGTGACAGCTGCCATGAGTCCATCACAGACGAGGAtaGCGCAAACGAAAAGGGAGGCTTCTGAGCGGGAGTCAAGCCATGGAGGAGTAGCTGGTAGTCCAGGAGAAGTTGAGAGCGGACCAACAGAGGACGTACGAGGAGAATATGAACCAGCTGATGGAGAGGAAGAACAGAGAAGGTAGAAATGCCGTAGCAGAGCATGACAGAGTTCTACAGGCCAGACTCAAGgagcagaatgacccTTTCCAGCAAGGGTTTGATGACAGACGACACCAAATGCAAAGAGAGATGCTCTTAAGGGAGCAAATGCACAAGAGGAAGAGAATAGGCCTTAATTTATGAGCAAGGCTCTGGATAAGGGTATAATTCCCAAAGTAGGAGGAATGGCCTTAAATTGGCTGTCAAAGTTGTTCTGATGAAGGTTCTTGAGATCGATTTTATCAACATTTATTGAAGTTAATTATTGACTTACTTTAAATTAAGCACTCCATTTAAGGTTTCATTTCATGTTAGCTtaaagaaccccccccccaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321936 lncRNA downstream 67737 62478534 ~ 62480130 (-) True G283899
TU321724 lncRNA downstream 134828 62412716 ~ 62413039 (-) True G283697
TU321614 lncRNA downstream 276608 62269224 ~ 62271259 (-) True G283589
TU321611 lncRNA downstream 293183 62248247 ~ 62254684 (-) True G283587
TU321561 lncRNA downstream 396377 62150524 ~ 62151490 (-) True G283541
TU322013 lncRNA upstream 18972 62614671 ~ 62621593 (-) True G283973
TU322014 lncRNA upstream 28509 62624208 ~ 62624555 (-) True G283974
TU322031 lncRNA upstream 56342 62652041 ~ 62652651 (-) True G283989
TU322033 lncRNA upstream 56979 62652678 ~ 62653109 (-) True G283990
TU322034 lncRNA upstream 57741 62653440 ~ 62654877 (-) False G283991
trnal-caa-2 mRNA downstream 4538 62543221 ~ 62543329 (-) True trnal-caa-2
trnal-caa mRNA downstream 5169 62542589 ~ 62542698 (-) True trnal-caa
XM_021597604.2 mRNA downstream 14560 62425684 ~ 62533307 (-) False LOC110520347
XM_036974881.1 mRNA upstream 152725 62748424 ~ 62780309 (-) False LOC110520353
XM_036974882.1 mRNA upstream 152725 62748424 ~ 62780312 (-) True LOC110520353
XM_021597618.2 mRNA upstream 237209 62832908 ~ 62841097 (-) True LOC110520357
XM_036974884.1 mRNA upstream 245761 62841460 ~ 62853625 (-) False LOC110520356
XM_021597617.2 mRNA upstream 245761 62841460 ~ 62853882 (-) False LOC110520356
TU315276 other downstream 4958684 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 5144292 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 5250105 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 7136380 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 118876 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 2373850 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 2418560 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 2459001 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 2459001 65054700 ~ 65075985 (-) True G286638

Expression Profile