RNA id: TCONS_00029058


Basic Information

Item Value
RNA id TCONS_00029058
length 537
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_014707
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 19549062 ~ 19599372 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTGCTGGAAGCCGGCTGTGTGCAGACAGGCGTGGCTTTTCGTCGgaagtgtggGGAGGTGATGGTGAGGCCCCTGCTGTCTGTGAACATCAGAGCCTGGAATCTAATGAGAGCCACACCAGCTTTTGCTTTGACACCAGACCTGACGTTCATAAGCAATGCCCCTTATGTGAGGTGATCTTTCCACCACACTTTGAGCAAAGCAGTTTTGAGCGACATGTGGAGTCTCACTGGAGAGTGTGTCCTGTCTGCAGCGAGCAGTTTCCTCTGGATTGCCAGCAACAACTCTATGAAAAGCATGTGCACACTCACTTTGATGGCAATGTTCTCAACTTCGACAACTTTGATTAGTGAGAAAGAAATGCTTTTAATATGACATATTCAGGGGCTTCAGCGTTTTGTTTAAAACACGCTAATGTTGTCACTTTGTTGTAACTGTCGCACAACTCATGCCAGAAGGACTCGCCATCTGAATATTTGATTTGCACATAGATGATGAATTAGAAGGGTTAGTTCCCCAATCAAAAAAGGAAAAT

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-587 Predicted to enable metal ion binding activity. Predicted to act upstream of or within apoptotic process. Orthologous to human TAX1BP1 (Tax1 binding protein 1).

Ensembl:

ensembl_id ENSDART00000164060

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030204 lncRNA downstream 39201 19510557 ~ 19512337 (-) True XLOC_014706
TCONS_00030203 lncRNA downstream 90241 19459051 ~ 19461297 (-) True XLOC_014704
TCONS_00030202 lncRNA downstream 271672 19275813 ~ 19279866 (-) False XLOC_014701
TCONS_00029048 lncRNA downstream 528178 19016195 ~ 19023360 (-) True XLOC_014700
TCONS_00029044 lncRNA downstream 598332 18942726 ~ 18953206 (-) True XLOC_014699
TCONS_00029065 lncRNA upstream 163025 19719803 ~ 19721485 (-) False XLOC_014710
TCONS_00029068 lncRNA upstream 177898 19734676 ~ 19737491 (-) False XLOC_014710
TCONS_00030205 lncRNA upstream 177898 19734676 ~ 19745732 (-) False XLOC_014710
TCONS_00029069 lncRNA upstream 177898 19734676 ~ 19777499 (-) False XLOC_014710
TCONS_00029067 lncRNA upstream 177898 19734676 ~ 19871167 (-) False XLOC_014710
TCONS_00029055 mRNA downstream 46371 19496479 ~ 19505167 (-) True XLOC_014705
TCONS_00029053 mRNA downstream 105009 19437648 ~ 19446529 (-) False XLOC_014703
TCONS_00029054 mRNA downstream 108555 19439899 ~ 19442983 (-) True XLOC_014703
TCONS_00029052 mRNA downstream 172454 19342177 ~ 19379084 (-) True XLOC_014702
TCONS_00029051 mRNA downstream 212253 19287803 ~ 19339285 (-) True XLOC_014701
TCONS_00029059 mRNA upstream 39827 19596605 ~ 19664743 (-) True XLOC_014708
TCONS_00029061 mRNA upstream 161193 19717971 ~ 19720744 (-) False XLOC_014710
TCONS_00029062 mRNA upstream 161193 19717971 ~ 19871211 (-) False XLOC_014710
TCONS_00029063 mRNA upstream 161196 19717974 ~ 19721556 (-) False XLOC_014710
TCONS_00029064 mRNA upstream 162789 19719567 ~ 19744565 (-) False XLOC_014710
TCONS_00029050 other downstream 212251 19287163 ~ 19339287 (-) False XLOC_014701
TCONS_00029042 other downstream 689658 18861739 ~ 18861880 (-) True XLOC_014697
TCONS_00029041 other downstream 696062 18854057 ~ 18855476 (-) True XLOC_014696
TCONS_00029038 other downstream 709995 18841413 ~ 18841543 (-) True XLOC_014695
TCONS_00029037 other downstream 712997 18838411 ~ 18838541 (-) True XLOC_014694
TCONS_00029060 other upstream 153149 19709927 ~ 19710042 (-) True XLOC_014709
TCONS_00029066 other upstream 171912 19728690 ~ 19728755 (-) True XLOC_014711
TCONS_00029070 other upstream 265384 19822162 ~ 19861512 (-) True XLOC_014710
TCONS_00029077 other upstream 587072 20143850 ~ 20148449 (-) False XLOC_014717
TCONS_00029085 other upstream 694894 20251672 ~ 20270141 (-) False XLOC_014721

Expression Profile

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